nataxazole
naturalproductmech:mibig-6f9e5ea5f0 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | SFONMRKWCPHKLA-UHFFFAOYSA-N |
|---|---|
| SMILES | COC(=O)C1=C2N=C(OC2=CC=C1)C1=C2N=C(OC2=CC=C1)C1=C(C)C=CC=C1O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA019425 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces sp. Tu 6176 NCBITaxon:1470557 |
SOURCE_ASSERTION | mibig:BGC0001213 | PMID:25892546 |
Occurrences 3
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1002/CBIC.201500153 |
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1002/CBIC.201500261 |
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1038/JA.2008.97 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001213 | Streptomyces sp. Tu 6176 NCBITaxon:1470557 |
CLUSTER_UNSTATED | genbank:KK106988.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
Causal graph — biosynthesis 15 nodes, 14 edges
Partial map of twelve native protein references explicitly annotated for nataxazole biosynthesis in GenBank LN713864.1, not a reconstructed sequence of experimentally demonstrated reactions. NatAM and NatL2 are grounded to exact UniProt/native sequences and checked against independent PDB deposits; the other ten references use verified GenPept identifiers without substituting homologs. All participation edges are database assertions, and NatAC2 remains proposed. The core-cluster association does not establish conversion to the exact final methyl ester: no nataxazole product endpoint, producer upgrade or complete-pathway claim is added. Native regulatory and transport candidates remain outside this core-protein mechanism; the functionless NatX annotation is not promoted.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| natP reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natAL reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natAN reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natIS reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natDB reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natAM reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natAC1 reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natL1 reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natS reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natL2 reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natPK reference protein (Tu 6176) | is annotated to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natAC2 reference protein (Tu 6176) | is proposed to participate in | nataxazole-associated core biosynthesis (partial, source-annotated) | Database-backed biosynthetic participation only. No reaction order, exact substrate/product pair, catalytic rate, deletion phenotype or essentiality is asserted. The protein node identifies the native reference, not an unspecified engineered construct. NatAC2 remains explicitly proposed in the source. See curator-nataxazole-reaction-and-product-scope for the final-product and mechanism limits. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natS reference protein (Tu 6176) | has a sequence-identical UniProtKB example | natS (Streptomyces sp. Tu 6176 UniProtKB example) | UniProtKB:A0A022MLV4 is the active Streptomyces sp. Tu 6176 natS entry sharing 100% amino-acid sequence identity (UPI000369AEC3) with LN849795.1 CEK42824.1. | https://www.uniprot.org/uniprotkb/A0A022MLV4 |
| natAC2 reference protein (Tu 6176) | has a sequence-identical UniProtKB example | natAC2 (S. olivoverticillatus Tu 6074 UniProtKB example) | UniProtKB:A0ABV8TEK9 (Streptomyces olivoverticillatus Tu 6074) shares 100% amino-acid sequence identity (UPI0003645395) with Streptomyces sp. Tu 6176 natAC2 (CEK42831.1). | https://www.uniprot.org/uniprotkb/A0ABV8TEK9 |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Causal graph — biosynthesis 13 nodes, 12 edges
Native cluster-associated regulation and proposed transport, separate from the core biosynthesis-protein map. Eight versioned GenPept references are supported by explicit LN713864.1 annotations and exact native DNA/protein sequence checks. All edges are database assertions: NatR1-4 are annotated regulators without an adopted regulatory sign or direct target, and NatT1-4 remain proposed transporters without a demonstrated substrate or direction. The common process groups source-associated roles; it is not a physical complex, ordered reaction sequence or proof that these proteins produce or export the exact final nataxazole methyl ester. No bioactivity target or self-resistance mechanism is asserted. Versioned native identifiers are used without substituting homologs or unaudited UniProt accessions.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| natR1 reference protein (Tu 6176) | has an annotated regulatory role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. No activating or repressing sign, direct DNA binding, target promoter, transcriptional response or yield change is adopted from this annotation. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natR2 reference protein (Tu 6176) | has an annotated regulatory role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. No activating or repressing sign, direct DNA binding, target promoter, transcriptional response or yield change is adopted from this annotation. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natR3 reference protein (Tu 6176) | has an annotated regulatory role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. No activating or repressing sign, direct DNA binding, target promoter, transcriptional response or yield change is adopted from this annotation. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natR4 reference protein (Tu 6176) | has an annotated regulatory role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. No activating or repressing sign, direct DNA binding, target promoter, transcriptional response or yield change is adopted from this annotation. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natT1 reference protein (Tu 6176) | has a proposed transport role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. Transport involvement remains proposed, as in the source. No import or export direction, transported chemical form, flux, ATP dependence in this pathway, or self-resistance phenotype is established here. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natT2 reference protein (Tu 6176) | has a proposed transport role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. Transport involvement remains proposed, as in the source. No import or export direction, transported chemical form, flux, ATP dependence in this pathway, or self-resistance phenotype is established here. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natT3 reference protein (Tu 6176) | has a proposed transport role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. Transport involvement remains proposed, as in the source. No import or export direction, transported chemical form, flux, ATP dependence in this pathway, or self-resistance phenotype is established here. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natT4 reference protein (Tu 6176) | has a proposed transport role in | nataxazole-associated biosynthetic system (source-annotated, partial) | No individual essentiality, complete pathway, final-product sufficiency, producer-grade upgrade or physical protein complex is asserted. Transport involvement remains proposed, as in the source. No import or export direction, transported chemical form, flux, ATP dependence in this pathway, or self-resistance phenotype is established here. The deposited "Drug resistance transporter" product name is not a demonstrated nataxazole-resistance result or a compound target. See curator-nataxazole-regulation-and-transport-scope for the unresolved mechanism. | https://www.ncbi.nlm.nih.gov/nuccore/LN713864.1 |
| natR2 reference protein (Tu 6176) | has a sequence-identical UniProtKB example | natR2 (S. olivoverticillatus Tu 6074 UniProtKB example) | UniProtKB:A0ABV8TEJ6 (Streptomyces olivoverticillatus Tu 6074) shares 100% amino-acid sequence identity (UPI0003661C80) with Streptomyces sp. Tu 6176 natR2 (CEK42815.1). | https://www.uniprot.org/uniprotkb/A0ABV8TEJ6 |
| natR3 reference protein (Tu 6176) | has a sequence-identical UniProtKB example | natR3 (S. olivoverticillatus Tu 6074 UniProtKB example) | UniProtKB:A0ABV8TFE0 (Streptomyces olivoverticillatus Tu 6074) shares 100% amino-acid sequence identity (UPI00036EBE62) with Streptomyces sp. Tu 6176 natR3 (CEK42828.1). | https://www.uniprot.org/uniprotkb/A0ABV8TFE0 |
| natT1 reference protein (Tu 6176) | has a sequence-identical UniProtKB example | natT1 (S. olivoverticillatus Tu 6074 UniProtKB example) | UniProtKB:A0ABV8TFC5 (Streptomyces olivoverticillatus Tu 6074) shares 100% amino-acid sequence identity (UPI0004478404) with Streptomyces sp. Tu 6176 natT1 (CEK42812.1). | https://www.uniprot.org/uniprotkb/A0ABV8TFC5 |
| natT4 reference protein (Tu 6176) | has a sequence-identical UniProtKB example | natT4 (S. olivoverticillatus Tu 6074 UniProtKB example) | UniProtKB:A0ABV8TEP5 (Streptomyces olivoverticillatus Tu 6074) shares 100% amino-acid sequence identity (UPI0004505055) with Streptomyces sp. Tu 6176 natT4 (CEK42829.1). | https://www.uniprot.org/uniprotkb/A0ABV8TEP5 |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Explore across X-Mech
Open questions 2
curator-nataxazole-reaction-and-product-scope — Which exact reactions and constructs establish the native core-protein roles, and which additional steps connect the core pathway to the exact nataxazole methyl ester?
curator-nataxazole-regulation-and-transport-scope — Which native regulatory targets and signs, and which transporter substrates and directions, are experimentally established for NatR1-4 and NatT1-4?
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001213 | MIBIG | 5 |
This page is generated from data/natural_products/polyketides/nataxazole.yaml, which is generated from the committed inventories. Neither is edited by hand.