palmerolide B
naturalproductmech:mibig-8f008d9d95 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | FAWDDZFFIALADY-MNQAKPFUSA-N |
|---|---|
| SMILES | CC(C)=CC(=O)N/C=C/C(C)=C/[C@@H](C)[C@H]1C/C(C)=C/C=C/CC[C@H](OS(=O)(=O)O)/C=C\[C@@H](O)[C@@H](OC(N)=O)CCC/C=C/C(=O)O1 |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA033522 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Candidatus Synoicihabitans palmerolidicus NCBITaxon:2818510 |
SOURCE_ASSERTION | mibig:BGC0002118 | DOI:10.1016/j.bmc.2011.06.004 |
Occurrences 0
None cited.
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002118 | Candidatus Synoicihabitans palmerolidicus NCBITaxon:2818510 |
CLUSTER_UNSTATED | genbank:JAGGDC010000009.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
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Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002118 | MIBIG | 3 |
This page is generated from data/natural_products/polyketides/palmerolide-b.yaml, which is generated from the committed inventories. Neither is edited by hand.