rubiginone B2
naturalproductmech:mibig-f491cb2954 MINTED SEEDED
Structure
| Standard InChIKey | ZUCWNLVDTXGGSU-JTQLQIEISA-N |
|---|---|
| SMILES | C[C@H]1CC2=C(C(=O)C1)C3=C(C=C2)C(=O)C4=C(C3=O)C=CC=C4OC |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA013535 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces sp. CB02414 NCBITaxon:1703922 |
BGC_CHARACTERIZED | mibig:BGC0002478 | PMID:34600534 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces griseorubiginosus NCBITaxon:67304 |
LOTUS | DOI:10.7164/ANTIBIOTICS.43.967 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002478 | Streptomyces sp. CB02414 NCBITaxon:1703922 |
CLUSTER_DEMONSTRATED | genbank:LIPF01000008.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002478 | MIBIG | 3 |
This page is generated from data/natural_products/polyketides/rubiginone-b2.yaml, which is generated from the committed inventories. Neither is edited by hand.