rubiginone L
naturalproductmech:mibig-90be3e9859 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | VAXYHYYWGOLRHM-VTWGAWQSSA-N |
|---|---|
| SMILES | COC1=CC=CC2=C1C(=O)C1=C(C3=C(C=C1)[C@@H](O)[C@H](C)C[C@@H]3O)[C@H]2O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA033194 |
Filing pathway
Polyketides — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces sp. CB02414 NCBITaxon:1703922 |
BGC_CHARACTERIZED | mibig:BGC0002478 | PMID:34600534 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1186/S12934-021-01681-5 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002478 | Streptomyces sp. CB02414 NCBITaxon:1703922 |
CLUSTER_DEMONSTRATED | genbank:LIPF01000008.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
Explore across X-Mech
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002478 | MIBIG | 3 |
This page is generated from data/natural_products/polyketides/rubiginone-l.yaml, which is generated from the committed inventories. Neither is edited by hand.