echoside D
naturalproductmech:mibig-23591b57da MINTED SEEDED
Structure
| Standard InChIKey | XQEMVDKXSBBLLC-QDSRYJPQSA-N |
|---|---|
| SMILES | O[C@H]1[C@H](OC2=C(C3=C(SC=N3)C(=C2O)C2=CC=CC=C2)C2=CC=CC=C2)O[C@@H]([C@@H](O)[C@@H]1O)C(O)=O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA016859 |
Filing pathway
Shikimates and phenylpropanoids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces sp. LZ35 NCBITaxon:1245024 |
SOURCE_ASSERTION | mibig:BGC0000340 | PMID:24865933 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1016/J.BMCL.2014.01.037 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000340 | Streptomyces sp. LZ35 NCBITaxon:1245024 |
CLUSTER_UNSTATED | genbank:KJ156360.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000340 | MIBIG | 5 |
This page is generated from data/natural_products/shikimates_and_phenylpropanoids/echoside-d.yaml, which is generated from the committed inventories. Neither is edited by hand.