3-deoxyaphidicolin
naturalproductmech:mibig-2dc5a6506a MINTED SEEDED
Structure
| Standard InChIKey | VHWTVINEPPOCLA-DTMQFJJTSA-N |
|---|---|
| SMILES | [H][C@]12C[C@]3([H])C[C@]1(CC[C@]3(O)CO)[C@@]1(C)CCC[C@@](C)(CO)[C@]1([H])CC2 |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA01381, pubchem:135046 |
Filing pathway
Terpenoids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is terpene, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Phoma betae NCBITaxon:1979465 |
SOURCE_ASSERTION | mibig:BGC0000676 | PMID:14745177 |
Occurrences 6
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Pleospora bjoerlingii NCBITaxon:318712 |
LOTUS | DOI:10.1016/S0040-4020(99)00392-0 |
| Pleospora bjoerlingii NCBITaxon:318712 |
LOTUS | DOI:10.1080/00021369.1984.10866385 |
| Pleospora bjoerlingii NCBITaxon:318712 |
LOTUS | DOI:10.1093/NAR/11.4.1197 |
| Pleospora bjoerlingii NCBITaxon:318712 |
LOTUS | DOI:10.1271/BBB1961.48.1687 |
| Pleospora bjoerlingii NCBITaxon:318712 |
LOTUS | DOI:10.1271/BBB1961.53.299 |
| Pleospora bjoerlingii NCBITaxon:318712 |
LOTUS | DOI:10.3186/JJPHYTOPATH.51.219 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000676 | Phoma betae NCBITaxon:1979465 |
CLUSTER_DEMONSTRATED | genbank:AB114137.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000676 | MIBIG | 5 |
This page is generated from data/natural_products/terpenoids/3-deoxyaphidicolin.yaml, which is generated from the committed inventories. Neither is edited by hand.