5α,9α,10β-labda-8(20),13-dien-15-yl diphosphate
CHEBI:30939 EXACT SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
The 5α,9α,10β-diastereomer of copalyl diphosphate.
Structure
| Standard InChIKey | JCAIWDXKLCEQEO-ATPOGHATSA-N |
|---|---|
| SMILES | C/C(=C\COP(=O)(O)OP(=O)(O)O)/CC[C@H]1C(=C)CC[C@@H]2[C@@]1(CCCC2(C)C)C |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | pubchem:5281990 |
Filing pathway
Terpenoids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is terpene, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Diaporthe amygdali NCBITaxon:1214568 |
SOURCE_ASSERTION | mibig:BGC0000688 | PMID:18391465 |
Occurrences 0
None cited.
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000688 | Diaporthe amygdali NCBITaxon:1214568 |
CLUSTER_UNSTATED | genbank:AB254160.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
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Open questions 1
name-disagreement — ChEBI calls this structure '5α,9α,10β-labda-8(20),13-dien-15-yl diphosphate' and MIBiG calls it 'copalyl diphosphate'. They share a Standard InChIKey, so if the names denote different compounds then one upstream record has the wrong structure. Check which.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000688 | MIBIG | 4 |
| CHEBI:30939 | CHEBI | 3-star |
This page is generated from data/natural_products/terpenoids/5-9-10-labda-8-20-13-dien-15-yl-diphosphate.yaml, which is generated from the committed inventories. Neither is edited by hand.