carotenoid
naturalproductmech:mibig-8426508598 MINTED SEEDED
Structure
| Standard InChIKey | MQXYWDPDLKUSFB-HOOXQTDMSA-N |
|---|---|
| SMILES | C[C@H](CCCCC(C)CCC[C@@H](C)CCCC(C)CCC=C(C)C)CCC[C@H](C)CCC[C@H](C)CCCC(C)(C)O[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | pubchem:446841 |
Filing pathway
Terpenoids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is terpene, from MIBiG.
Producer organisms 16
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces avermitilis NCBITaxon:33903 |
SOURCE_ASSERTION | mibig:BGC0000633 | PMID:11572948 |
| Brevundimonas sp. SD212 NCBITaxon:1113698 |
SOURCE_ASSERTION | mibig:BGC0000634 | PMID:16085816 |
| Paracoccus sp. N81106 NCBITaxon:81397 |
SOURCE_ASSERTION | mibig:BGC0000635 | PMID:7733978 |
| Brevibacterium linens NCBITaxon:1703 |
SOURCE_ASSERTION | mibig:BGC0000636 | PMID:10821176 |
| Corynebacterium glutamicum NCBITaxon:1718 |
SOURCE_ASSERTION | mibig:BGC0000637 | PMID:11432736 |
| Pantoea ananatis NCBITaxon:553 |
SOURCE_ASSERTION | mibig:BGC0000638 | PMID:2254247 |
| Enterobacteriaceae bacterium DC260 NCBITaxon:338904 |
SOURCE_ASSERTION | mibig:BGC0000639 | PMID:16332796 |
| Enterobacteriaceae bacterium DC404 NCBITaxon:338905 |
SOURCE_ASSERTION | mibig:BGC0000640 | PMID:16332796 |
| Enterobacteriaceae bacterium DC416 NCBITaxon:338906 |
SOURCE_ASSERTION | mibig:BGC0000641 | PMID:16332796 |
| Enterobacteriaceae bacterium DC413 NCBITaxon:338907 |
SOURCE_ASSERTION | mibig:BGC0000642 | PMID:16332796 |
| Brevundimonas vesicularis NCBITaxon:41276 |
SOURCE_ASSERTION | mibig:BGC0000643 | PMID:16781830 |
| Dietzia sp. CQ4 NCBITaxon:370437 |
SOURCE_ASSERTION | mibig:BGC0000644 | PMID:17008032 |
| Halobacillus halophilus DSM 2266 NCBITaxon:866895 |
SOURCE_ASSERTION | mibig:BGC0000645 | PMID:18820900 |
| Rhodobacter sphaeroides NCBITaxon:1063 |
SOURCE_ASSERTION | mibig:BGC0000647 | PMID:8021167 |
| Myxococcus xanthus NCBITaxon:34 |
SOURCE_ASSERTION | mibig:BGC0000648 | PMID:7588751 |
| Streptomyces griseus subsp. griseus NBRC 13350 NCBITaxon:455632 |
SOURCE_ASSERTION | mibig:BGC0000649 | PMID:11200234 |
Occurrences 9
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Halobacillus halophilus NCBITaxon:1570 |
LOTUS | DOI:10.1007/S00203-008-0431-1 |
| Dietzia NCBITaxon:37914 |
LOTUS | DOI:10.1016/J.GENE.2006.08.006 |
| Brevundimonas NCBITaxon:41275 |
LOTUS | DOI:10.1128/AEM.71.8.4286-4296.2005 |
| Enterobacteriaceae NCBITaxon:543 |
LOTUS | DOI:10.1128/AEM.71.12.8141-8146.2005 |
| Rhodobacter sphaeroides NCBITaxon:1063 |
LOTUS | DOI:10.1128/JB.176.13.3859-3869.1994 |
| Brevibacterium linens NCBITaxon:1703 |
LOTUS | DOI:10.1007/S004380051186 |
| Streptomyces avermitilis NCBITaxon:33903 |
LOTUS | DOI:10.1073/PNAS.211433198 |
| Myxococcus xanthus NCBITaxon:34 |
LOTUS | DOI:10.1111/J.1432-1033.1995.238_1.X |
| Brevundimonas vesicularis NCBITaxon:41276 |
LOTUS | DOI:10.1016/J.GENE.2006.04.017 |
Biosynthetic gene clusters 16
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000633 | Streptomyces avermitilis NCBITaxon:33903 |
CLUSTER_UNSTATED | genbank:AB070934.1 |
| mibig:BGC0000634 | Brevundimonas sp. SD212 NCBITaxon:1113698 |
CLUSTER_UNSTATED | genbank:AB181388.1 |
| mibig:BGC0000635 | Paracoccus sp. N81106 NCBITaxon:81397 |
CLUSTER_UNSTATED | genbank:AB206672.1 |
| mibig:BGC0000636 | Brevibacterium linens NCBITaxon:1703 |
CLUSTER_UNSTATED | genbank:AF139916.1 |
| mibig:BGC0000637 | Corynebacterium glutamicum NCBITaxon:1718 |
CLUSTER_UNSTATED | genbank:AF159510.1 |
| mibig:BGC0000638 | Pantoea ananatis NCBITaxon:553 |
CLUSTER_UNSTATED | genbank:D90087.2 |
| mibig:BGC0000639 | Enterobacteriaceae bacterium DC260 NCBITaxon:338904 |
CLUSTER_UNSTATED | genbank:DQ090833.1 |
| mibig:BGC0000640 | Enterobacteriaceae bacterium DC404 NCBITaxon:338905 |
CLUSTER_UNSTATED | genbank:DQ090834.1 |
| mibig:BGC0000641 | Enterobacteriaceae bacterium DC416 NCBITaxon:338906 |
CLUSTER_UNSTATED | genbank:DQ090835.1 |
| mibig:BGC0000642 | Enterobacteriaceae bacterium DC413 NCBITaxon:338907 |
CLUSTER_UNSTATED | genbank:DQ090836.1 |
| mibig:BGC0000643 | Brevundimonas vesicularis NCBITaxon:41276 |
CLUSTER_UNSTATED | genbank:DQ309446.1 |
| mibig:BGC0000644 | Dietzia sp. CQ4 NCBITaxon:370437 |
CLUSTER_UNSTATED | genbank:DQ369754.1 |
| mibig:BGC0000645 | Halobacillus halophilus DSM 2266 NCBITaxon:866895 |
CLUSTER_UNSTATED | genbank:FJ040212.1 |
| mibig:BGC0000647 | Rhodobacter sphaeroides NCBITaxon:1063 |
CLUSTER_UNSTATED | genbank:S71770.1 |
| mibig:BGC0000648 | Myxococcus xanthus NCBITaxon:34 |
CLUSTER_UNSTATED | genbank:Z21955.2 |
| mibig:BGC0000649 | Streptomyces griseus subsp. griseus NBRC 13350 NCBITaxon:455632 |
CLUSTER_UNSTATED | genbank:AF272737.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0000633, BGC0000634, BGC0000635, BGC0000636, BGC0000637, BGC0000638, BGC0000639, BGC0000640, BGC0000641, BGC0000642, BGC0000643, BGC0000644, BGC0000645, BGC0000647, BGC0000648, BGC0000649. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000633 | MIBIG | 3 |
| BGC0000634 | MIBIG | 3 |
| BGC0000635 | MIBIG | 3 |
| BGC0000636 | MIBIG | 3 |
| BGC0000637 | MIBIG | 3 |
| BGC0000638 | MIBIG | 3 |
| BGC0000639 | MIBIG | 3 |
| BGC0000640 | MIBIG | 3 |
| BGC0000641 | MIBIG | 3 |
| BGC0000642 | MIBIG | 3 |
| BGC0000643 | MIBIG | 3 |
| BGC0000644 | MIBIG | 3 |
| BGC0000645 | MIBIG | 3 |
| BGC0000647 | MIBIG | 3 |
| BGC0000648 | MIBIG | 3 |
| BGC0000649 | MIBIG | 3 |
This page is generated from data/natural_products/terpenoids/carotenoid-2.yaml, which is generated from the committed inventories. Neither is edited by hand.