gibberellin
naturalproductmech:mibig-761557f01e MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | IXORZMNAPKEEDV-QTWFBFKQSA-N |
|---|---|
| SMILES | CC12[C@H](C=C[C@@]3([C@@H]1[C@@H]([C@]45[C@H]3CC[C@](C4)(C(=C)C5)O)C(=O)O)OC2=O)O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
Filing pathway
Terpenoids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is terpene, from MIBiG.
Producer organisms 2
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Fusarium fujikuroi NCBITaxon:5127 |
SOURCE_ASSERTION | mibig:BGC0001604 | PMID:27298592 |
| Sinorhizobium fredii NGR234 NCBITaxon:394 |
SOURCE_ASSERTION | mibig:BGC0001605 | PMID:27842068 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Ricinocarpos stylosus NCBITaxon:3875123 |
LOTUS | DOI:10.1126/SCIENCE.144.3620.849 |
| Fusarium fujikuroi NCBITaxon:5127 |
LOTUS | DOI:10.5423/PPJ.OA.12.2015.0263 |
Biosynthetic gene clusters 2
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001604 | Fusarium fujikuroi NCBITaxon:5127 |
CLUSTER_UNSTATED | genbank:KT216505.1 |
| mibig:BGC0001605 | Sinorhizobium fredii NGR234 NCBITaxon:394 |
CLUSTER_UNSTATED | genbank:NC_000914.2 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
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Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0001604, BGC0001605. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001604 | MIBIG | 3 |
| BGC0001605 | MIBIG | 3 |
This page is generated from data/natural_products/terpenoids/gibberellin.yaml, which is generated from the committed inventories. Neither is edited by hand.