sodorifen
naturalproductmech:mibig-0ea28266f1 MINTED SEEDED
Structure
| Standard InChIKey | GXPHTJFKVOCWKQ-PDLCYRHZSA-N |
|---|---|
| SMILES | C[C@@H]1C(=C)[C@@H]([C@@]2(C([C@]1(C(=C2C)C)C)C)C)C |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | pubchem:46187193, npatlas:NPA031220 |
Filing pathway
Terpenoids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is terpene, from MIBiG.
Producer organisms 2
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Serratia plymuthica 4Rx13 NCBITaxon:682634 |
SOURCE_ASSERTION | mibig:BGC0001361 | PMID:27231241 |
| Serratia plymuthica NCBITaxon:82996 |
SOURCE_ASSERTION | mibig:BGC0002283 | PMID:30732610 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Serratia odorifera NCBITaxon:618 |
LOTUS | DOI:10.1002/ANIE.200905680 |
| Serratia plymuthica NCBITaxon:82996 |
LOTUS | DOI:10.1093/FEMSLE/FNW139 |
Biosynthetic gene clusters 2
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001361 | Serratia plymuthica 4Rx13 NCBITaxon:682634 |
CLUSTER_UNSTATED | genbank:CP006250.1 |
| mibig:BGC0002283 | Serratia plymuthica NCBITaxon:82996 |
CLUSTER_DEMONSTRATED | genbank:RBLL01000001.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0001361, BGC0002283. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001361 | MIBIG | 3 |
| BGC0002283 | MIBIG | 2 |
This page is generated from data/natural_products/terpenoids/sodorifen.yaml, which is generated from the committed inventories. Neither is edited by hand.