empedopeptin
naturalproductmech:mibig-c759e3c4ac MINTED SEEDED
Structure
| Standard InChIKey | WSCOCOSDPASNLN-KWFINCGOSA-N |
|---|---|
| SMILES | CCCCCCCCCCC[C@H]1CC(=O)N2CCC[C@H]2C(=O)N[C@@H](C(=O)N3CCC[C@@H]3C(=O)N[C@@H](C(=O)N[C@@H](C(=O)N[C@H](C(=O)N4CC[C@H]([C@H]4C(=O)N[C@@H](C(=O)O1)[C@@H](C(=O)O)O)O)CO)[C@@H](C(=O)O)O)CCCN=C(N)N)CO |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA020908 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Massilia sp. YMA4 NCBITaxon:1593482 |
BGC_CHARACTERIZED | mibig:BGC0002044 | DOI:10.1074/jbc.m112.369561 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Massilia NCBITaxon:149698 |
LOTUS | DOI:10.3390/MD19040209 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002044 | Massilia sp. YMA4 NCBITaxon:1593482 |
CLUSTER_DEMONSTRATED | genbank:CP030092.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002044 | MIBIG | 2 |
This page is generated from data/natural_products/unclassified/empedopeptin.yaml, which is generated from the committed inventories. Neither is edited by hand.