frederiksenibactin
naturalproductmech:mibig-b529fe76f7 MINTED SEEDED
Structure
| Standard InChIKey | YTIOHQGZCPYGOD-FSJACQRISA-N |
|---|---|
| SMILES | NCCCC[C@H](NC(=O)C1=C(O)C(O)=CC=C1)C(=O)N[C@@H](COC(=O)[C@H](COC(=O)[C@H](CO)NC(=O)[C@H](CCCCN)NC(=O)C1=C(O)C(O)=CC=C1)NC(=O)[C@H](CCCCN)NC(=O)C1=C(O)C(O)=CC=C1)C(=O)O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA033076 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Yersinia frederiksenii ATCC 33641 NCBITaxon:349966 |
SOURCE_ASSERTION | mibig:BGC0002413 | PMID:34603680 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Yersinia frederiksenii NCBITaxon:29484 |
LOTUS | DOI:10.1039/D1SC03541J |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002413 | Yersinia frederiksenii ATCC 33641 NCBITaxon:349966 |
CLUSTER_UNSTATED | genbank:KN150731.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002413 | MIBIG | 3 |
This page is generated from data/natural_products/unclassified/frederiksenibactin.yaml, which is generated from the committed inventories. Neither is edited by hand.