lydicamycin
naturalproductmech:mibig-a0453972fa MINTED SEEDED
Structure
| Standard InChIKey | HNSRCWWMQWCNGW-YCUXMAJDSA-N |
|---|---|
| SMILES | CC1=CC2C(CCC(C2O)O)C(C1CCC(C)C(/C(=C/CC(/C=C/C(C)C(/C=C/CC(/C(=C/CC(CC3CCCN3C(=N)N)O)/C)O)O)O)/C)O)(C)/C(=C\4/C(=O)CNC4=O)/O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | pubchem:90469739 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Streptomyces sp. ID38640 NCBITaxon:1265399 |
SOURCE_ASSERTION | mibig:BGC0001477 | DOI:10.1016/j.chembiol.2018.02.008 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1016/J.CHEMBIOL.2018.02.008 |
| Streptomyces lydicus NCBITaxon:47763 |
LOTUS | DOI:10.3389/FMICB.2019.02077 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001477 | Streptomyces sp. ID38640 NCBITaxon:1265399 |
CLUSTER_UNSTATED | genbank:MG459168.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001477 | MIBIG | 5 |
This page is generated from data/natural_products/unclassified/lydicamycin.yaml, which is generated from the committed inventories. Neither is edited by hand.