lysobactin
naturalproductmech:mibig-b827f52d51 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | KQMKBWMQSNKASI-AVSFGBOWSA-N |
|---|---|
| SMILES | CC[C@H](C)[C@@H]1NC(=O)[C@@H](CCCNC(N)=N)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](N)CC(C)C)[C@H](OC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)CNC(=O)[C@@H](NC1=O)[C@H](C)O)[C@H](O)C(N)=O)C1=CC=CC=C1)[C@H](O)C(C)C |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA017094, pubchem:197270 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Lysobacter sp. ATCC 53042 NCBITaxon:324869 |
SOURCE_ASSERTION | mibig:BGC0000385 | PMID:21609846 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Lysobacter NCBITaxon:68 |
LOTUS | DOI:10.1021/JO00266A029 |
| Lysobacter NCBITaxon:68 |
LOTUS | DOI:10.7164/ANTIBIOTICS.41.1740 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000385 | Lysobacter sp. ATCC 53042 NCBITaxon:324869 |
CLUSTER_UNSTATED | genbank:JF412274.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
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Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000385 | MIBIG | 5 |
This page is generated from data/natural_products/unclassified/lysobactin.yaml, which is generated from the committed inventories. Neither is edited by hand.