muscoride B
naturalproductmech:mibig-f4bf230570 MINTED SEEDED
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | RYLVRVUEEVJKJO-OPXMRZJTSA-N |
|---|---|
| SMILES | CC[C@H](C)[C@H](NCC=C(C)C)C(=O)N1CCC[C@H]1C1=NC(C2=NC(C3=NC(C(=O)OCC=C(C)C)=CO3)=C(C)O2)=CO1 |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA025875 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is ribosomal, other, terpene, from MIBiG.
Producer organisms 2
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Desmonostoc sp. PCC 7906 NCBITaxon:1181 |
SOURCE_ASSERTION | mibig:BGC0002485 | PMID:31674754 |
| Nostoc sp. UHCC-0398 NCBITaxon:2665154 |
SOURCE_ASSERTION | mibig:BGC0002551 | PMID:31674754 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Nostoc NCBITaxon:1177 |
LOTUS | DOI:10.1021/ACSCHEMBIO.9B00620 |
Biosynthetic gene clusters 2
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0002485 | Desmonostoc sp. PCC 7906 NCBITaxon:1181 |
CLUSTER_DEMONSTRATED | genbank:MK806443.1 |
| mibig:BGC0002551 | Nostoc sp. UHCC-0398 NCBITaxon:2665154 |
CLUSTER_DEMONSTRATED | genbank:MK806444.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Biosynthesis curated
Written by a curator with claim-level evidence on each step; not derived from a source. This is what the rest of the record exists to support.
| Step | Enzyme | Reaction | Substrate → product | Evidence |
|---|---|---|---|---|
| 1 | MusF1 UniProtKB:A0A5Q0TWZ6 |
ungrounded → ungrounded | DOI:10.1021/acschembio.9b00620 | |
| 2 | MusF2 UniProtKB:A0A5Q0TX00 |
ungrounded → ungrounded | DOI:10.1021/acschembio.9b00620 |
Step 1: The Nostoc sp. UHCC-0398 MusF1 cyanobactin prenyltransferase is curated as the C-terminal prenyltransferase for a muscoride B precursor. The exact carboxy-prenylated intermediate is left ungrounded.
Step 2: The Nostoc sp. UHCC-0398 MusF2 cyanobactin prenyltransferase is curated as the N-terminal prenyltransferase for a muscoride B precursor. The exact amine-prenylated intermediate is left ungrounded.
Mechanism & Biosynthesis Overview
Causal graph — biosynthesis 6 nodes, 6 edges
Partial Nostoc sp. UHCC-0398 mus-cluster graph for the MusE precursor and the MusF1/MusF2 terminal prenylation steps in muscoride B biosynthesis.
| Subject | Predicate | Object | Notes | Evidence |
|---|---|---|---|---|
| MusE precursor peptide | supplies precursor peptide for | C-terminal prenylation of the muscoride precursor | DOI:10.1021/acschembio.9b00620 |
|
| MusE precursor peptide | supplies precursor peptide for | N-terminal prenylation of the muscoride precursor | DOI:10.1021/acschembio.9b00620 |
|
| MusF1 | catalyzes | C-terminal prenylation of the muscoride precursor | DOI:10.1021/acschembio.9b00620 |
|
| MusF2 | catalyzes | N-terminal prenylation of the muscoride precursor | DOI:10.1021/acschembio.9b00620 |
|
| C-terminal prenylation of the muscoride precursor | contributes to | muscoride B | Muscoride B is represented only as the downstream bis-prenylated product because the exact C-prenylated intermediate is not grounded. | DOI:10.1021/acschembio.9b00620 |
| N-terminal prenylation of the muscoride precursor | contributes to | muscoride B | Muscoride B is represented only as the downstream bis-prenylated product because the exact N-prenylated intermediate is not grounded. | DOI:10.1021/acschembio.9b00620 |
Every edge carries its own citation; an uncited edge is refused by the corpus tests.
Explore across X-Mech
Open questions 1
shared-structure — This structure is reported by more than one MIBiG entry: BGC0002485, BGC0002551. Confirm they describe the same compound rather than an upstream cross-reference error.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0002485 | MIBIG | 2 |
| BGC0002551 | MIBIG | 2 |
This page is generated from data/natural_products/unclassified/muscoride-b.yaml, which is generated from the committed inventories. Neither is edited by hand.