orfamide B
naturalproductmech:mibig-3b85e99c4b MINTED SEEDED
Structure
| Standard InChIKey | FPMIEPCWEZBKGP-UHFFFAOYSA-N |
|---|---|
| SMILES | CCCCCCCCCCCC(O)CC(=O)NC(CC(C)C)C(=O)NC(CCC(O)=O)C(=O)NC1C(C)OC(=O)C(NC(=O)C(CO)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)C(CO)NC(=O)C(CC(C)C)NC(=O)C(NC1=O)C(C)C)C(C)C |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA02140 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas sp. CMR12a NCBITaxon:658629 |
BGC_CHARACTERIZED | mibig:BGC0000398 | PMID:24673852 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Pseudomonas NCBITaxon:286 |
LOTUS | DOI:10.1111/1462-2920.12462 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000398 | Pseudomonas sp. CMR12a NCBITaxon:658629 |
CLUSTER_DEMONSTRATED | genbank:JQ309921.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000398 | MIBIG | 5 |
This page is generated from data/natural_products/unclassified/orfamide-b.yaml, which is generated from the committed inventories. Neither is edited by hand.