Pf-5 pyoverdine
naturalproductmech:mibig-c6c717ed6d MINTED SEEDED
Structure
| Standard InChIKey | SVXKHIPPUVZILX-KCLNMYHUSA-O |
|---|---|
| SMILES | C[C@@H]1NC(=O)[C@@H](NC(=O)[C@H](CCCCN)NC(=O)[C@@H](CCCN(O)C=O)NC(=O)[C@H](CC(=O)O)NC(=O)[C@@H]2CCNC3=C(NC(=O)CCC(=O)O)C=C4C=C(O)C(O)=CC4=[N+]32)[C@@H](C)OC(=O)[C@H](CCCCN)NC(=O)[C@@H](CCCN(O)C=O)NC(=O)[C@@H](C)NC1=O |
| Stereochemistry | fully defined |
| Cross-references | npatlas:NPA014047 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas protegens Pf-5 NCBITaxon:220664 |
SOURCE_ASSERTION | mibig:BGC0000413 | PMID:8704959 |
Occurrences 1
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Pseudomonas protegens NCBITaxon:380021 |
LOTUS | DOI:10.1128/JB.01639-12 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000413 | Pseudomonas protegens Pf-5 NCBITaxon:220664 |
CLUSTER_UNSTATED | genbank:CP000076.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000413 | MIBIG | 5 |
This page is generated from data/natural_products/unclassified/pf-5-pyoverdine.yaml, which is generated from the committed inventories. Neither is edited by hand.