psymberin
naturalproductmech:mibig-d13d933374 MINTED SEEDED
Structure
| Standard InChIKey | BNNIEBYABSNREN-CYRUSRGFSA-N |
|---|---|
| SMILES | CC1=C2C[C@@H](OC(=O)C2=C(C=C1O)O)[C@H](C)[C@H](C[C@@H]3C([C@@H](C[C@H](O3)[C@@H](NC(=O)[C@H]([C@H](CC(=C)C)OC)O)OC)O)(C)C)O |
| Stereochemistry | fully defined |
| Cross-references | pubchem:11456257, pubchem:11692946 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| uncultured bacterium psy1 NCBITaxon:693111 |
SOURCE_ASSERTION | mibig:BGC0001110 | PMID:19448639 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Ircinia ramosa NCBITaxon:281041 |
LOTUS | DOI:10.1021/JM030207D |
| Psammocinia bulbosa NCBITaxon:676669 |
LOTUS | DOI:10.1021/NP800230D |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001110 | uncultured bacterium psy1 NCBITaxon:693111 |
CLUSTER_DEMONSTRATED | genbank:FJ823461.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001110 | MIBIG | 5 |
This page is generated from data/natural_products/unclassified/psymberin.yaml, which is generated from the committed inventories. Neither is edited by hand.