rakicidin A
naturalproductmech:mibig-fddd330e1e MINTED SEEDED
Structure
| Standard InChIKey | NODOLTRBPIFGCQ-HNENSFHCSA-N |
|---|---|
| SMILES | CC(C)CCCCCCCCCCCC(C)C1OC(=O)C(NC(=O)CN(C)C(=O)\C=C/C(=C)NC(=O)C1C)C(O)C(N)=O |
| Stereochemistry | undefined stereocentres — the InChIKey does not distinguish this compound from its stereoisomers |
| Cross-references | npatlas:NPA019491 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Micromonospora purpureochromogenes NCBITaxon:47872 |
SOURCE_ASSERTION | mibig:BGC0001327 | PMID:26637117 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Micromonospora NCBITaxon:1873 |
LOTUS | DOI:10.7164/ANTIBIOTICS.48.1446 |
| Streptomyces NCBITaxon:1883 |
LOTUS | DOI:10.1038/JA.2017.92 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001327 | Micromonospora purpureochromogenes NCBITaxon:47872 |
CLUSTER_UNSTATED | genbank:NZ_JOEU01000001.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001327 | MIBIG | 5 |
This page is generated from data/natural_products/unclassified/rakicidin-a-2.yaml, which is generated from the committed inventories. Neither is edited by hand.