syringomycin
naturalproductmech:mibig-0dc63932d0 MINTED SEEDED
Structure
| Standard InChIKey | ZQVJBRJGDVZANE-MXDMHAPNSA-N |
|---|---|
| SMILES | CCCCCCCCC[C@@H](CC(=O)N[C@H]1COC(=O)[C@@H](NC(=O)[C@@H](NC(=O)/C(=C/C)/NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](NC(=O)[C@H](NC1=O)CO)CCN)CCN)CCCN=C(N)N)CC2=CC=CC=C2)[C@@H](C(=O)O)O)[C@@H](CCl)O)O |
| Stereochemistry | fully defined |
| Cross-references | pubchem:11966095 |
Filing pathway
Unclassified — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Pseudomonas syringae pv. syringae B728a NCBITaxon:205918 |
SOURCE_ASSERTION | mibig:BGC0000437 | PMID:11277431 |
Occurrences 6
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Pseudomonas NCBITaxon:286 |
LOTUS | DOI:10.1016/0040-4039(90)80024-G |
| Pseudomonas syringae NCBITaxon:317 |
LOTUS | DOI:10.1016/0040-4039(90)80024-G |
| Pseudomonas syringae NCBITaxon:317 |
LOTUS | DOI:10.1016/S0014-5793(99)01528-8 |
| Pseudomonas syringae NCBITaxon:317 |
LOTUS | DOI:10.1039/P19920001149 |
| Pseudomonas syringae NCBITaxon:317 |
LOTUS | DOI:10.1094/MPMI.2001.14.3.336 |
| Pseudomonas syringae NCBITaxon:317 |
LOTUS | DOI:10.1111/J.1365-2672.1985.TB01444.X |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0000437 | Pseudomonas syringae pv. syringae B728a NCBITaxon:205918 |
CLUSTER_UNSTATED | genbank:CP000075.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0000437 | MIBIG | 5 |
This page is generated from data/natural_products/unclassified/syringomycin.yaml, which is generated from the committed inventories. Neither is edited by hand.