phenylethylamine degradation II

MetaCyc:PWY-6534

The complete native two-reaction route converts 2-phenylethylamine through phenylacetaldehyde to phenylacetate in Pseudomonas putida strain U. The CTQ-containing PeaACD quinohaemoprotein dehydrogenase uses an external electron acceptor, unlike the copper/TPQ oxidase of degradation I. The complete Rhea equation retains the generic A/AH2 redox couple; it does not identify a strain-U physiological acceptor. Azurin-like carrier reconstitution used P. putida IFO 15366, and cytochrome c550 experiments used Paracoccus, so neither is substituted here. PeaACD composition and cofactor assignments are source-curated, with the strain-U heterotrimer assignment described as in silico in BRENDA. PeaB supports enzyme maturation/activity rather than serving as a fourth catalytic subunit. The NAD-dependent PeaE activity is retained without fixing its oligomeric state: native MetaCyc annotates a homodimer, whereas later secondary literature describes a PeaEFG complex. PeaE is not the only possible aldehyde-oxidizing activity; its deletion retains activity and growth, and PeaF/G are proposed contributors whose exact catalytic chemistry is not resolved here. This record does not claim that the listed proteins alone reconstitute strain-U growth. Transport, cofactor maturation, respiratory-chain regeneration and downstream phenylacetate assimilation lie outside the two native reactions. The 2008 strain-U primary abstract was inspected; its full body was unavailable, so detailed database statements are not presented as directly inspected primary results.

Pathway type
aromatic amine degradation
Organism scope

Read the source YAML

Pathway network

22 nodes · 24 asserted directed edges

Arrows show recorded subject → object relationships, not necessarily metabolic flow. Select a node for details or an arrow for evidence. Scroll, zoom or find a node to explore.

Pathway network: phenylethylamine degradation II 22 nodes · 24 asserted directed edges. Every arrow links to its evidence table row; nodes link to their component details. Isolated declared components are retained. CHEBI:225237 — consumes → RHEA:36724; Evidence: RHEA:36724consumes CHEBI:13193 — consumes → RHEA:36724; Evidence: RHEA:36724consumes CHEBI:15377 — consumes → RHEA:36724; Evidence: RHEA:36724consumes RHEA:36724 — produces → CHEBI:16424; Evidence: RHEA:36724produces RHEA:36724 — produces → CHEBI:17499; Evidence: RHEA:36724produces RHEA:36724 — produces → CHEBI:28938; Evidence: RHEA:36724produces CHEBI:16424 — consumes → RHEA:21393; Evidence: RHEA:21393consumes CHEBI:57540 — consumes → RHEA:21393; Evidence: RHEA:21393consumes CHEBI:15377 — consumes → RHEA:21393; Evidence: RHEA:21393consumes RHEA:21393 — produces → CHEBI:18401; Evidence: RHEA:21393produces RHEA:21393 — produces → CHEBI:57945; Evidence: RHEA:21393produces RHEA:21393 — produces → CHEBI:15378; Evidence: RHEA:21393produces MetaCyc:CPLX-8088 — catalyzes → RHEA:36724; Source-curated activity association. This does not claim that strain-U complex stoichiometry was measured by purification or crystallography.; Evidence: MetaCyc:CPLX-8088, MetaCyc:RXN-11510catalyzes UniProtKB:B1N7H3 — enables → RHEA:21393; Functional gene-product/activity association only: neither an active isolated monomer nor a fixed PeaE or PeaEFG stoichiometry is asserted. Alternative aldehyde oxidation remains possible.; Evidence: MetaCyc:CPLX-8089, MetaCyc:MONOMER-15732, MetaCyc:PHENDEHYD-RXN, RHEA:21393enables MetaCyc:CPLX-8088 — has_part → UniProtKB:B1N7H2; Native annotated composition, supported at an in silico/source-curation tier; not direct strain-U structural stoichiometry evidence.; Evidence: MetaCyc:CPLX-8088, MetaCyc:MONOMER-15729, DOI:10.1111/j.1462-2920.2007.01464.xhas part MetaCyc:CPLX-8088 — has_part → UniProtKB:B1N7G9; Native annotated composition, supported at an in silico/source-curation tier; not direct strain-U structural stoichiometry evidence.; Evidence: MetaCyc:CPLX-8088, MetaCyc:MONOMER-15730, DOI:10.1111/j.1462-2920.2007.01464.xhas part MetaCyc:CPLX-8088 — has_part → UniProtKB:B1N7H0; Native annotated composition, supported at an in silico/source-curation tier; not direct strain-U structural stoichiometry evidence.; Evidence: MetaCyc:CPLX-8088, MetaCyc:MONOMER-15731, DOI:10.1111/j.1462-2920.2007.01464.xhas part UniProtKB:B1N7H1 — enables → MetaCyc:CPLX-8088; Accessory activity/maturation requirement; not a fourth structural subunit, an individually sufficient catalyst, or a fully specified maturation reaction.; Evidence: MetaCyc:CPLX-8088, UniProtKB:B1N7H1, DOI:10.1111/j.1462-2920.2007.01464.xenables MetaCyc:CPLX-8088 — has_cofactor → CHEBI:20252; Covalently integrated residue, not a freely consumed metabolite. The free CTQ compound CHEBI:73670 linked by old MetaCyc is not substituted for the bound residue.; Evidence: MetaCyc:PWY-6534, DOI:10.1111/j.1462-2920.2007.01464.x, CHEBI:20252, PMID:22235135has cofactor MetaCyc:CPLX-8088 — has_cofactor → CHEBI:30413; Source-curated cofactor assignment; generic heme class preserves the unspecified iron oxidation state. No strain-U experimental stoichiometry measurement is claimed.; Evidence: DOI:10.1111/j.1462-2920.2007.01464.xhas cofactor RHEA:36724 — part_of → MetaCyc:PWY-6534; Evidence: MetaCyc:PWY-6534, MetaCyc:RXN-11510part of RHEA:21393 — part_of → MetaCyc:PWY-6534; Evidence: MetaCyc:PWY-6534, MetaCyc:PHENDEHYD-RXN, RHEA:21393part of RHEA:36724 — provides_input_for → RHEA:21393; Evidence: MetaCyc:PWY-6534, RHEA:36724, RHEA:21393provides input for MetaCyc:PWY-6534 — part_of → NCBITaxon:303; Strain U is the experimental scope. Species-level identifier does not assert equivalent pathway function in all P. putida strains.; Evidence: PMID:18177365, UniProtKB:B1N7H2part of 2-phenylethanaminium; CHEBI:225237; Declared type: small_molecule small molecule 2-phenylethanaminium hydrogen acceptor; CHEBI:13193; Declared type: small_molecule small molecule hydrogen acceptor water; CHEBI:15377; Declared type: small_molecule small molecule water phenylacetaldehyde; CHEBI:16424; Declared type: small_molecule small molecule phenylacetaldehyde hydrogen donor; CHEBI:17499; Declared type: small_molecule small molecule hydrogen donor ammonium; CHEBI:28938; Declared type: small_molecule small molecule ammonium NAD(1-); CHEBI:57540; Declared type: small_molecule small molecule NAD(1-) phenylacetate; CHEBI:18401; Declared type: small_molecule small molecule phenylacetate NADH(2-); CHEBI:57945; Declared type: small_molecule small molecule NADH(2-) hydron; CHEBI:15378; Declared type: small_molecule small molecule hydron PeaA; UniProtKB:B1N7H2; Declared type: protein protein PeaA PeaD; UniProtKB:B1N7G9; Declared type: protein protein PeaD PeaC; UniProtKB:B1N7H0; Declared type: protein protein PeaC PeaB; UniProtKB:B1N7H1; Declared type: protein protein PeaB PeaE; UniProtKB:B1N7H3; Declared type: protein protein PeaE quinohaemoprotein amine dehydrogenase; MetaCyc:CPLX-8088; Declared type: complex complex quinohaemoprotein amine dehydrogenase cysteine tryptophylquinone residue; CHEBI:20252; Declared type: cofactor cofactor cysteine tryptophylquinone residue heme; CHEBI:30413; Declared type: cofactor cofactor heme 2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+); RHEA:36724; Declared type: molecular_activity; Source reaction direction: left_to_right molecular activity 2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+) 2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+); RHEA:21393; Declared type: molecular_activity; Source reaction direction: left_to_right molecular activity 2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+) Pseudomonas putida; NCBITaxon:303; Declared type: taxon taxon Pseudomonas putida phenylethylamine degradation II; MetaCyc:PWY-6534; Declared type: pathway pathway phenylethylamine degradation II

Components and activities

Declared biological components and source reaction directions
NodeKind or roleSource direction
Pseudomonas putida
NCBITaxon:303
taxon
2-phenylethanaminium
CHEBI:225237
small molecule
hydrogen acceptor
CHEBI:13193
small molecule
water
CHEBI:15377
small molecule
phenylacetaldehyde
CHEBI:16424
small molecule
hydrogen donor
CHEBI:17499
small molecule
ammonium
CHEBI:28938
small molecule
NAD(1-)
CHEBI:57540
small molecule
phenylacetate
CHEBI:18401
small molecule
NADH(2-)
CHEBI:57945
small molecule
hydron
CHEBI:15378
small molecule
PeaA
UniProtKB:B1N7H2
protein
PeaD
UniProtKB:B1N7G9
protein
PeaC
UniProtKB:B1N7H0
protein
PeaB
UniProtKB:B1N7H1
protein
PeaE
UniProtKB:B1N7H3
protein
quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
complex
cysteine tryptophylquinone residue
CHEBI:20252
cofactor
heme
CHEBI:30413
cofactor
2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
molecular activityleft to right
2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
molecular activityleft to right

Mechanistic edges

Mechanistic edges and their cited evidence
SubjectPredicate and descriptionObjectEvidence
2-phenylethanaminium
CHEBI:225237
consumes

2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
  • RHEA:36724

    Source assertion: The directed Rhea reaction places CHEBI:225237 on its substrates side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/36724/rh:substrates -> http://rdf.rhea-db.org/36723_L/rh:contains1 -> http://rdf.rhea-db.org/Participant_36723_compound_4466/rh:compound -> http://rdf.rhea-db.org/Compound_4466/rh:chebi
hydrogen acceptor
CHEBI:13193
consumes

2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
  • RHEA:36724

    Source assertion: The directed Rhea reaction places CHEBI:13193 on its substrates side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/36724/rh:substrates -> http://rdf.rhea-db.org/36723_L/rh:contains1 -> http://rdf.rhea-db.org/Participant_36723_compound_3512/rh:compound -> http://rdf.rhea-db.org/Compound_3512/rh:chebi
water
CHEBI:15377
consumes

2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
  • RHEA:36724

    Source assertion: The directed Rhea reaction places CHEBI:15377 on its substrates side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/36724/rh:substrates -> http://rdf.rhea-db.org/36723_L/rh:contains1 -> http://rdf.rhea-db.org/Participant_36723_compound_1283/rh:compound -> http://rdf.rhea-db.org/Compound_1283/rh:chebi
2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
produces

phenylacetaldehyde
CHEBI:16424
  • RHEA:36724

    Source assertion: The directed Rhea reaction places CHEBI:16424 on its products side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/36724/rh:products -> http://rdf.rhea-db.org/36723_R/rh:contains1 -> http://rdf.rhea-db.org/Participant_36723_compound_2222/rh:compound -> http://rdf.rhea-db.org/Compound_2222/rh:chebi
2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
produces

hydrogen donor
CHEBI:17499
  • RHEA:36724

    Source assertion: The directed Rhea reaction places CHEBI:17499 on its products side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/36724/rh:products -> http://rdf.rhea-db.org/36723_R/rh:contains1 -> http://rdf.rhea-db.org/Participant_36723_compound_1304/rh:compound -> http://rdf.rhea-db.org/Compound_1304/rh:chebi
2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
produces

ammonium
CHEBI:28938
  • RHEA:36724

    Source assertion: The directed Rhea reaction places CHEBI:28938 on its products side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/36724/rh:products -> http://rdf.rhea-db.org/36723_R/rh:contains1 -> http://rdf.rhea-db.org/Participant_36723_compound_1012/rh:compound -> http://rdf.rhea-db.org/Compound_1012/rh:chebi
phenylacetaldehyde
CHEBI:16424
consumes

2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
  • RHEA:21393

    Source assertion: The directed Rhea reaction places CHEBI:16424 on its substrates side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/21393/rh:substrates -> http://rdf.rhea-db.org/21392_L/rh:contains1 -> http://rdf.rhea-db.org/Participant_21392_compound_2222/rh:compound -> http://rdf.rhea-db.org/Compound_2222/rh:chebi
NAD(1-)
CHEBI:57540
consumes

2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
  • RHEA:21393

    Source assertion: The directed Rhea reaction places CHEBI:57540 on its substrates side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/21393/rh:substrates -> http://rdf.rhea-db.org/21392_L/rh:contains1 -> http://rdf.rhea-db.org/Participant_21392_compound_3484/rh:compound -> http://rdf.rhea-db.org/Compound_3484/rh:chebi
water
CHEBI:15377
consumes

2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
  • RHEA:21393

    Source assertion: The directed Rhea reaction places CHEBI:15377 on its substrates side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/21393/rh:substrates -> http://rdf.rhea-db.org/21392_L/rh:contains1 -> http://rdf.rhea-db.org/Participant_21392_compound_1283/rh:compound -> http://rdf.rhea-db.org/Compound_1283/rh:chebi
2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
produces

phenylacetate
CHEBI:18401
  • RHEA:21393

    Source assertion: The directed Rhea reaction places CHEBI:18401 on its products side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/21393/rh:products -> http://rdf.rhea-db.org/21392_R/rh:contains1 -> http://rdf.rhea-db.org/Participant_21392_compound_5243/rh:compound -> http://rdf.rhea-db.org/Compound_5243/rh:chebi
2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
produces

NADH(2-)
CHEBI:57945
  • RHEA:21393

    Source assertion: The directed Rhea reaction places CHEBI:57945 on its products side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/21393/rh:products -> http://rdf.rhea-db.org/21392_R/rh:contains1 -> http://rdf.rhea-db.org/Participant_21392_compound_1650/rh:compound -> http://rdf.rhea-db.org/Compound_1650/rh:chebi
2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
produces

hydron
CHEBI:15378
  • RHEA:21393

    Source assertion: The directed Rhea reaction places CHEBI:15378 on its products side with coefficient 2.

    Source locationhttp://rdf.rhea-db.org/21393/rh:products -> http://rdf.rhea-db.org/21392_R/rh:contains2 -> http://rdf.rhea-db.org/Participant_21392_compound_3249/rh:compound -> http://rdf.rhea-db.org/Compound_3249/rh:chebi
quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
catalyzes

Source-curated activity association. This does not claim that strain-U complex stoichiometry was measured by purification or crystallography.

2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
  • MetaCyc:CPLX-8088

    Source assertion: The strain-U quinohaemoprotein complex is annotated as the enzyme of ENZRXN-17923, which points to RXN-11510.

    Source locationProtein[@frameid="CPLX-8088"]/catalyzes/Enzymatic-Reaction[@frameid="ENZRXN-17923"]/reaction
  • MetaCyc:RXN-11510

    Source assertion: RXN-11510 is explicitly unified with forward RHEA:36724 and is annotated LEFT-TO-RIGHT.

    Source locationReaction[@frameid="RXN-11510"]/dblink[dblink-db="RHEA"]; reaction-direction
PeaE
UniProtKB:B1N7H3
enables

Functional gene-product/activity association only: neither an active isolated monomer nor a fixed PeaE or PeaEFG stoichiometry is asserted. Alternative aldehyde oxidation remains possible.

2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
  • MetaCyc:CPLX-8089

    Source assertion: The native source assigns the strain-U peaE product to NAD-dependent phenylacetaldehyde dehydrogenase activity and reports retained activity and growth after peaE deletion.

    Source locationProtein[@frameid="CPLX-8089"]/comment; catalyzes/Enzymatic-Reaction[@frameid="ENZRXN-17924"]/reaction
  • MetaCyc:MONOMER-15732

    Source assertion: The native PeaE polypeptide is explicitly unified with UniProtKB:B1N7H3 and is a component of CPLX-8089.

    Source locationProtein[@frameid="MONOMER-15732"]/synonym; component-of; dblink[dblink-db="UNIPROT"]
  • MetaCyc:PHENDEHYD-RXN

    Source assertion: PHENDEHYD-RXN is annotated REVERSIBLE and cross-references bidirectional RHEA:21395.

    Source locationReaction[@frameid="PHENDEHYD-RXN"]/reaction-direction; dblink[dblink-db="RHEA"]
  • RHEA:21393

    Source assertion: Master RHEA:21392 links to forward RHEA:21393 and bidirectional RHEA:21395.

    Source locationhttp://rdf.rhea-db.org/21392/rh:directionalReaction -> http://rdf.rhea-db.org/21393; rh:bidirectionalReaction -> http://rdf.rhea-db.org/21395
quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
has_part

Native annotated composition, supported at an in silico/source-curation tier; not direct strain-U structural stoichiometry evidence.

PeaA
UniProtKB:B1N7H2
  • MetaCyc:CPLX-8088

    Source assertion: The native complex annotates one MONOMER-15729 component (PeaA); this is a curated composition assignment.

    Source locationProtein[@frameid="CPLX-8088"]/component[Protein/@frameid="MONOMER-15729"]/coefficient
  • MetaCyc:MONOMER-15729

    Source assertion: The native polypeptide explicitly unifies MONOMER-15729 with UniProtKB:B1N7H2.

    Source locationProtein[@frameid="MONOMER-15729"]/dblink[dblink-db="UNIPROT"]
  • DOI:10.1111/j.1462-2920.2007.01464.x

    Source assertion: BRENDA describes the strain-U heterotrimer assignment as determined by in silico experiments.

    Source locationBRENDA reference 686425; Subunits table; EC 1.4.9.1; heterotrimer row
quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
has_part

Native annotated composition, supported at an in silico/source-curation tier; not direct strain-U structural stoichiometry evidence.

PeaD
UniProtKB:B1N7G9
  • MetaCyc:CPLX-8088

    Source assertion: The native complex annotates one MONOMER-15730 component (PeaD); this is a curated composition assignment.

    Source locationProtein[@frameid="CPLX-8088"]/component[Protein/@frameid="MONOMER-15730"]/coefficient
  • MetaCyc:MONOMER-15730

    Source assertion: The native polypeptide explicitly unifies MONOMER-15730 with UniProtKB:B1N7G9.

    Source locationProtein[@frameid="MONOMER-15730"]/dblink[dblink-db="UNIPROT"]
  • DOI:10.1111/j.1462-2920.2007.01464.x

    Source assertion: BRENDA describes the strain-U heterotrimer assignment as determined by in silico experiments.

    Source locationBRENDA reference 686425; Subunits table; EC 1.4.9.1; heterotrimer row
quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
has_part

Native annotated composition, supported at an in silico/source-curation tier; not direct strain-U structural stoichiometry evidence.

PeaC
UniProtKB:B1N7H0
  • MetaCyc:CPLX-8088

    Source assertion: The native complex annotates one MONOMER-15731 component (PeaC); this is a curated composition assignment.

    Source locationProtein[@frameid="CPLX-8088"]/component[Protein/@frameid="MONOMER-15731"]/coefficient
  • MetaCyc:MONOMER-15731

    Source assertion: The native polypeptide explicitly unifies MONOMER-15731 with UniProtKB:B1N7H0.

    Source locationProtein[@frameid="MONOMER-15731"]/dblink[dblink-db="UNIPROT"]
  • DOI:10.1111/j.1462-2920.2007.01464.x

    Source assertion: BRENDA describes the strain-U heterotrimer assignment as determined by in silico experiments.

    Source locationBRENDA reference 686425; Subunits table; EC 1.4.9.1; heterotrimer row
PeaB
UniProtKB:B1N7H1
enables

Accessory activity/maturation requirement; not a fourth structural subunit, an individually sufficient catalyst, or a fully specified maturation reaction.

quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
  • MetaCyc:CPLX-8088

    Source assertion: The native source reports that peaB knockout mutations render the quinohaemoprotein enzyme inactive.

    Source locationProtein[@frameid="CPLX-8088"]/comment, second paragraph
  • UniProtKB:B1N7H1

    Source assertion: This sequence entry identifies peaB, protein ABR57203.1, from the strain-U nucleotide-sequence submission associated with PMID18177365.

    Source locationgenes/geneName; references[citation/id="18177365"]/referenceComments[type="STRAIN"]; uniProtKBCrossReferences[database="EMBL"]
  • DOI:10.1111/j.1462-2920.2007.01464.x

    Source assertion: BRENDA identifies PeaB as needed for correct function and post-translational modification of the gamma subunit, not an interacting component during catalytic turnover.

    Source locationBRENDA reference 686425; Subunits table; EC 1.4.9.1; additional information row
quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
has_cofactor

Covalently integrated residue, not a freely consumed metabolite. The free CTQ compound CHEBI:73670 linked by old MetaCyc is not substituted for the bound residue.

cysteine tryptophylquinone residue
CHEBI:20252
  • MetaCyc:PWY-6534

    Source assertion: The native pathway describes its quinohaemoprotein amine dehydrogenase as using cysteine tryptophylquinone (CTQ).

    Source locationPathway[@frameid="PWY-6534"]/comment, first paragraph
  • DOI:10.1111/j.1462-2920.2007.01464.x

    Source assertion: BRENDA annotates CTQ as a redox cofactor of this enzyme.

    Source locationBRENDA reference 686425; Cofactor table; EC 1.4.9.1
  • CHEBI:20252

    Source assertion: ChEBI defines this entity as an amino-acid residue derived from cysteine tryptophylquinone.

    Source locationCHEBI:20252; rdfs:label; IAO:0000115
  • PMID:22235135

    Source assertion: The Introduction identifies CTQ as a post-translationally derived gamma-subunit cofactor of QHNDH. The experiments in this paper concern P. denitrificans Pd1222, not strain U.

    Source locationPMC3307263; Introduction (sec1), first paragraph; Experimental Procedures (sec2), Materials and Bacterial Strains
quinohaemoprotein amine dehydrogenase
MetaCyc:CPLX-8088
has_cofactor

Source-curated cofactor assignment; generic heme class preserves the unspecified iron oxidation state. No strain-U experimental stoichiometry measurement is claimed.

heme
CHEBI:30413
  • DOI:10.1111/j.1462-2920.2007.01464.x

    Source assertion: BRENDA annotates two hemes acting as redox-active groups in addition to CTQ.

    Source locationBRENDA reference 686425; Cofactor table; EC 1.4.9.1; cysteine tryptophylquinone row
2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
part_of

MetaCyc:PWY-6534
  • MetaCyc:PWY-6534

    Source assertion: The complete native reaction-list includes RXN-11510; its pathway layout selects the left-to-right catabolic direction.

    Source locationPathway[@frameid="PWY-6534"]/reaction-list; reaction-layout[Reaction/@frameid="RXN-11510"]
  • MetaCyc:RXN-11510

    Source assertion: RXN-11510 is explicitly unified with forward RHEA:36724 and is annotated LEFT-TO-RIGHT.

    Source locationReaction[@frameid="RXN-11510"]/dblink[dblink-db="RHEA"]; reaction-direction
2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
part_of

MetaCyc:PWY-6534
  • MetaCyc:PWY-6534

    Source assertion: The complete native reaction-list includes PHENDEHYD-RXN; its pathway layout selects the left-to-right catabolic direction.

    Source locationPathway[@frameid="PWY-6534"]/reaction-list; reaction-layout[Reaction/@frameid="PHENDEHYD-RXN"]
  • MetaCyc:PHENDEHYD-RXN

    Source assertion: PHENDEHYD-RXN is annotated REVERSIBLE and cross-references bidirectional RHEA:21395.

    Source locationReaction[@frameid="PHENDEHYD-RXN"]/reaction-direction; dblink[dblink-db="RHEA"]
  • RHEA:21393

    Source assertion: Master RHEA:21392 links to forward RHEA:21393 and bidirectional RHEA:21395.

    Source locationhttp://rdf.rhea-db.org/21392/rh:directionalReaction -> http://rdf.rhea-db.org/21393; rh:bidirectionalReaction -> http://rdf.rhea-db.org/21395
2-phenylethylamine + A + H2O => 2-phenylacetaldehyde + AH2 + NH4(+)
RHEA:36724
provides_input_for

2-phenylacetaldehyde + NAD(+) + H2O => 2-phenylacetate + NADH + 2 H(+)
RHEA:21393
  • MetaCyc:PWY-6534

    Source assertion: The native pathway orders RXN-11510 before PHENDEHYD-RXN through phenylacetaldehyde.

    Source locationPathway[@frameid="PWY-6534"]/reaction-ordering; reaction-layout
  • RHEA:36724

    Source assertion: The directed Rhea reaction places CHEBI:16424 on its products side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/36724/rh:products -> http://rdf.rhea-db.org/36723_R/rh:contains1 -> http://rdf.rhea-db.org/Participant_36723_compound_2222/rh:compound -> http://rdf.rhea-db.org/Compound_2222/rh:chebi
  • RHEA:21393

    Source assertion: The directed Rhea reaction places CHEBI:16424 on its substrates side with coefficient 1.

    Source locationhttp://rdf.rhea-db.org/21393/rh:substrates -> http://rdf.rhea-db.org/21392_L/rh:contains1 -> http://rdf.rhea-db.org/Participant_21392_compound_2222/rh:compound -> http://rdf.rhea-db.org/Compound_2222/rh:chebi
MetaCyc:PWY-6534part_of

Strain U is the experimental scope. Species-level identifier does not assert equivalent pathway function in all P. putida strains.

Pseudomonas putida
NCBITaxon:303
  • PMID:18177365

    Source assertion: The inspected primary abstract reports the strain-U Pea route: phenylethylamine transport, quinohaemoprotein-mediated deamination to phenylacetaldehyde, then oxidation to phenylacetate.

    Source locationresultList/result[id="18177365"]/abstractText
  • UniProtKB:B1N7H2

    Source assertion: The sequence entry identifies Pseudomonas putida, NCBI taxon 303, and identifies strain U for the original nucleotide-sequence reference.

    Source locationorganism/taxonId; references[citation/id="18177365"]/referenceComments[type="STRAIN"]

References

Curation history