Sulfate assimilation

Reactome:R-MTU-936635

Mycobacterium tuberculosis sulfate uptake and activation links SubI binding, CysTWA transport, CysD/CysNC-dependent APS synthesis, APS phosphorylation and the CysQ PAPS-hydrolysis branch. GTP hydrolysis is coupled to APS synthesis, correcting its placement on APS kinase in Reactome. This record does not assert exclusive sulfate dependence, universal enzyme essentiality or complete stoichiometric balance. CysQ PAPS activity is qualitatively supported; PAP is its better-characterized substrate.

Pathway type
biopax pathway
Organism scope

Read the source YAML

Pathway network

33 nodes · 72 asserted directed edges

Arrows show recorded subject → object relationships, not necessarily metabolic flow. Select a node for details or an arrow for evidence. Scroll, zoom or find a node to explore.

Pathway network: Sulfate assimilation 33 nodes · 72 asserted directed edges. Every arrow links to its evidence table row; nodes link to their component details. Isolated declared components are retained. Reactome:R-MTU-936726 — consumes → Reactome:R-MTU-936667; Evidence: Reactome:R-MTU-936635consumes Reactome:R-ALL-427648 — consumes → Reactome:R-MTU-936667; Evidence: Reactome:R-MTU-936635consumes Reactome:R-MTU-936667 — produces → Reactome:R-MTU-936589; Evidence: Reactome:R-MTU-936635produces CHEBI:30616 — consumes → Reactome:R-MTU-936631; Evidence: Reactome:R-MTU-936635consumes CHEBI:15377 — consumes → Reactome:R-MTU-936631; Evidence: Reactome:R-MTU-936635consumes Reactome:R-MTU-936589 — consumes → Reactome:R-MTU-936631; Evidence: Reactome:R-MTU-936635consumes Reactome:R-MTU-936631 — produces → Reactome:R-MTU-936726; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936631 — produces → CHEBI:456216; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936631 — produces → CHEBI:43474; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936631 — produces → Reactome:R-ALL-174375; Evidence: Reactome:R-MTU-936635produces CHEBI:30616 — consumes → Reactome:R-MTU-936729; Evidence: Reactome:R-MTU-936635consumes Reactome:R-ALL-174375 — consumes → Reactome:R-MTU-936729; Evidence: Reactome:R-MTU-936635consumes Reactome:R-MTU-936729 — produces → CHEBI:58243; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936729 — produces → CHEBI:33019; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936729 — occurs_in → GO:0005829; Evidence: Reactome:R-MTU-936635occurs in CHEBI:30616 — consumes → Reactome:R-MTU-936583; Evidence: Reactome:R-MTU-936635consumes CHEBI:58243 — consumes → Reactome:R-MTU-936583; Evidence: Reactome:R-MTU-936635consumes CHEBI:15377 — consumes → Reactome:R-MTU-936729; Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.; Evidence: UniProtKB:P9WNM5consumes CHEBI:37565 — consumes → Reactome:R-MTU-936729; Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.; Evidence: UniProtKB:P9WNM5, PMID:15615729consumes Reactome:R-MTU-936583 — produces → CHEBI:456216; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936583 — produces → CHEBI:15378; Qualitative hydron product supported by the APS kinase reaction. Reactome source multiplicity of two is not retained. APS-synthesis proton consumption and coupled GTP-hydrolysis proton production are netted; this graph has no explicit stoichiometric model.; Evidence: UniProtKB:P9WNM5produces Reactome:R-MTU-936729 — produces → CHEBI:43474; Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.; Evidence: UniProtKB:P9WNM5produces Reactome:R-MTU-936583 — produces → CHEBI:58339; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936729 — produces → CHEBI:58189; Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.; Evidence: UniProtKB:P9WNM5produces Reactome:R-MTU-936583 — occurs_in → GO:0005829; Evidence: Reactome:R-MTU-936635occurs in CHEBI:15377 — consumes → Reactome:R-MTU-936659; Evidence: Reactome:R-MTU-936635consumes CHEBI:58339 — consumes → Reactome:R-MTU-936659; Evidence: Reactome:R-MTU-936635consumes Reactome:R-MTU-936659 — produces → CHEBI:58243; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936659 — produces → CHEBI:43474; Evidence: Reactome:R-MTU-936635produces Reactome:R-MTU-936659 — occurs_in → GO:0005829; Evidence: Reactome:R-MTU-936635occurs in Reactome:R-MTU-936707 — catalyzes → Reactome:R-MTU-936631; Evidence: Reactome:R-MTU-936635catalyzes Reactome:R-MTU-936606 — catalyzes → Reactome:R-MTU-936729; Evidence: Reactome:R-MTU-936635catalyzes Reactome:R-MTU-936606 — catalyzes → Reactome:R-MTU-936583; Evidence: Reactome:R-MTU-936635catalyzes Reactome:R-MTU-936691 — catalyzes → Reactome:R-MTU-936659; Source CysQ PAPS hydrolysis assignment has qualitative biochemical support (PMID18454554). PAP, not PAPS, was quantitatively characterized; membrane localization and oligomer context are retained as Reactome assertions.; Evidence: Reactome:R-MTU-936635catalyzes CHEBI:37565 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:33019 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:58243 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in Reactome:R-ALL-174375 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:43474 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:456216 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:15377 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:30616 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:58189 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:58339 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in CHEBI:15378 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in Reactome:R-ALL-427648 — located_in → GO:0005576; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936726 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936691 — has_part → Reactome:R-MTU-936671; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936691 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936671 — has_part → CHEBI:18420; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936671 — has_part → Reactome:R-MTU-936577; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936671 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936577 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in CHEBI:18420 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936606 — has_part → Reactome:R-MTU-936597; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936606 — has_part → Reactome:R-MTU-936698; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936606 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936698 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936597 — located_in → GO:0005829; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936707 — has_part → Reactome:R-MTU-936743; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936707 — has_part → Reactome:R-MTU-936656; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936707 — has_part → Reactome:R-MTU-936681; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936707 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936681 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936656 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936743 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936589 — has_part → Reactome:R-MTU-936726; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936589 — has_part → Reactome:R-ALL-427648; Evidence: Reactome:R-MTU-936635has part Reactome:R-MTU-936589 — located_in → GO:0005886; Evidence: Reactome:R-MTU-936635located in Reactome:R-MTU-936667 — provides_input_for → Reactome:R-MTU-936631; Source-ordered material transfer through Reactome:R-MTU-936589; no regulatory sign or stoichiometric coefficient is asserted.; Evidence: Reactome:R-MTU-936635provides input for Reactome:R-MTU-936631 — provides_input_for → Reactome:R-MTU-936729; Source-ordered material transfer through Reactome:R-ALL-174375; no regulatory sign or stoichiometric coefficient is asserted.; Evidence: Reactome:R-MTU-936635provides input for Reactome:R-MTU-936729 — provides_input_for → Reactome:R-MTU-936583; Source-ordered material transfer through CHEBI:58243; no regulatory sign or stoichiometric coefficient is asserted.; Evidence: Reactome:R-MTU-936635provides input for SO4(2-); Reactome:R-ALL-427648; Declared type: small_molecule small molecule SO4(2-) ATP(4-); CHEBI:30616; Declared type: small_molecule small molecule ATP(4-) water; CHEBI:15377; Declared type: small_molecule small molecule water ADP(3-); CHEBI:456216; Declared type: small_molecule small molecule ADP(3-) hydrogenphosphate; CHEBI:43474; Declared type: small_molecule small molecule hydrogenphosphate SO4(2-); Reactome:R-ALL-174375; Declared type: small_molecule small molecule SO4(2-) 5'-adenylyl sulfate(2-); CHEBI:58243; Declared type: small_molecule small molecule 5'-adenylyl sulfate(2-) diphosphate(3-); CHEBI:33019; Declared type: small_molecule small molecule diphosphate(3-) GTP(4-); CHEBI:37565; Declared type: small_molecule small molecule GTP(4-) hydron; CHEBI:15378; Declared type: small_molecule small molecule hydron 3'-phosphonato-5'-adenylyl sulfate(4-); CHEBI:58339; Declared type: small_molecule small molecule 3'-phosphonato-5'-adenylyl sulfate(4-) GDP(3-); CHEBI:58189; Declared type: small_molecule small molecule GDP(3-) magnesium(2+); CHEBI:18420; Declared type: cofactor cofactor magnesium(2+) SubI; Reactome:R-MTU-936726; Declared type: protein protein SubI CysT; Reactome:R-MTU-936743; Declared type: protein protein CysT CysA; Reactome:R-MTU-936656; Declared type: protein protein CysA CysW; Reactome:R-MTU-936681; Declared type: protein protein CysW CysNC; Reactome:R-MTU-936597; Declared type: protein protein CysNC CysD; Reactome:R-MTU-936698; Declared type: protein protein CysD CysQ; Reactome:R-MTU-936577; Declared type: protein protein CysQ SubI--sulfate complex; Reactome:R-MTU-936589; Declared type: complex complex SubI--sulfate complex sulfate ABC transporter; Reactome:R-MTU-936707; Declared type: complex complex sulfate ABC transporter sulfate adenylyltransferase complex; Reactome:R-MTU-936606; Declared type: complex complex sulfate adenylyltransferase complex CysQ dimer; Reactome:R-MTU-936691; Declared type: complex complex CysQ dimer CysQ-Mg++; Reactome:R-MTU-936671; Declared type: complex complex CysQ-Mg++ plasma membrane; GO:0005886; Declared type: cellular_component cellular component plasma membrane extracellular region; GO:0005576; Declared type: cellular_component cellular component extracellular region cytosol; GO:0005829; Declared type: cellular_component cellular component cytosol sulfate binds to SubI outside the membrane; Reactome:R-MTU-936667; Declared type: molecular_activity; Source reaction direction: left_to_right molecular activity sulfate binds to SubI outside the membrane sulfate uptake in the cytosol; Reactome:R-MTU-936631; Declared type: molecular_activity; Source reaction direction: left_to_right molecular activity sulfate uptake in the cytosol sulfate is activated to APS; Reactome:R-MTU-936729; Declared type: molecular_activity; Source reaction direction: left_to_right molecular activity sulfate is activated to APS APS is phosphorylated to PAPS; Reactome:R-MTU-936583; Declared type: molecular_activity; Source reaction direction: left_to_right molecular activity APS is phosphorylated to PAPS PAPS is dephosphorylated to APS; Reactome:R-MTU-936659; Declared type: molecular_activity; Source reaction direction: left_to_right molecular activity PAPS is dephosphorylated to APS

Components and activities

Declared biological components and source reaction directions
NodeKind or roleSource direction
Mycobacterium tuberculosis
NCBITaxon:1773
taxon
SO4(2-)
Reactome:R-ALL-427648
small molecule
ATP(4-)
CHEBI:30616
small molecule
water
CHEBI:15377
small molecule
ADP(3-)
CHEBI:456216
small molecule
hydrogenphosphate
CHEBI:43474
small molecule
SO4(2-)
Reactome:R-ALL-174375
small molecule
5'-adenylyl sulfate(2-)
CHEBI:58243
small molecule
diphosphate(3-)
CHEBI:33019
small molecule
GTP(4-)
CHEBI:37565
small molecule
hydron
CHEBI:15378
small molecule
3'-phosphonato-5'-adenylyl sulfate(4-)
CHEBI:58339
small molecule
GDP(3-)
CHEBI:58189
small molecule
magnesium(2+)
CHEBI:18420
cofactor
SubI
Reactome:R-MTU-936726
protein
CysT
Reactome:R-MTU-936743
protein
CysA
Reactome:R-MTU-936656
protein
CysW
Reactome:R-MTU-936681
protein
CysNC
Reactome:R-MTU-936597
protein
CysD
Reactome:R-MTU-936698
protein
CysQ
Reactome:R-MTU-936577
protein
SubI--sulfate complex
Reactome:R-MTU-936589
complex
sulfate ABC transporter
Reactome:R-MTU-936707
complex
sulfate adenylyltransferase complex
Reactome:R-MTU-936606
complex
CysQ dimer
Reactome:R-MTU-936691
complex
CysQ-Mg++
Reactome:R-MTU-936671
complex
plasma membrane
GO:0005886
cellular component
extracellular region
GO:0005576
cellular component
cytosol
GO:0005829
cellular component
sulfate binds to SubI outside the membrane
Reactome:R-MTU-936667
molecular activityleft to right
sulfate uptake in the cytosol
Reactome:R-MTU-936631
molecular activityleft to right
sulfate is activated to APS
Reactome:R-MTU-936729
molecular activityleft to right
APS is phosphorylated to PAPS
Reactome:R-MTU-936583
molecular activityleft to right
PAPS is dephosphorylated to APS
Reactome:R-MTU-936659
molecular activityleft to right

Mechanistic edges

Mechanistic edges and their cited evidence
SubjectPredicate and descriptionObjectEvidence
SubI
Reactome:R-MTU-936726
consumes

sulfate binds to SubI outside the membrane
Reactome:R-MTU-936667
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction1 places physical entity Protein1 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction1/bp:left/#Protein1; #BiochemicalReaction1/bp:conversionDirection
SO4(2-)
Reactome:R-ALL-427648
consumes

sulfate binds to SubI outside the membrane
Reactome:R-MTU-936667
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction1 places physical entity SmallMolecule1 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction1/bp:left/#SmallMolecule1; #BiochemicalReaction1/bp:conversionDirection
sulfate binds to SubI outside the membrane
Reactome:R-MTU-936667
produces

SubI--sulfate complex
Reactome:R-MTU-936589
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction1 places physical entity Complex1 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction1/bp:right/#Complex1; #BiochemicalReaction1/bp:conversionDirection
ATP(4-)
CHEBI:30616
consumes

sulfate uptake in the cytosol
Reactome:R-MTU-936631
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction2 places physical entity SmallMolecule2 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction2/bp:left/#SmallMolecule2; #BiochemicalReaction2/bp:conversionDirection
water
CHEBI:15377
consumes

sulfate uptake in the cytosol
Reactome:R-MTU-936631
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction2 places physical entity SmallMolecule3 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction2/bp:left/#SmallMolecule3; #BiochemicalReaction2/bp:conversionDirection
SubI--sulfate complex
Reactome:R-MTU-936589
consumes

sulfate uptake in the cytosol
Reactome:R-MTU-936631
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction2 places physical entity Complex1 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction2/bp:left/#Complex1; #BiochemicalReaction2/bp:conversionDirection
sulfate uptake in the cytosol
Reactome:R-MTU-936631
produces

SubI
Reactome:R-MTU-936726
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction2 places physical entity Protein1 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction2/bp:right/#Protein1; #BiochemicalReaction2/bp:conversionDirection
sulfate uptake in the cytosol
Reactome:R-MTU-936631
produces

ADP(3-)
CHEBI:456216
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction2 places physical entity SmallMolecule4 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction2/bp:right/#SmallMolecule4; #BiochemicalReaction2/bp:conversionDirection
sulfate uptake in the cytosol
Reactome:R-MTU-936631
produces

hydrogenphosphate
CHEBI:43474
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction2 places physical entity SmallMolecule5 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction2/bp:right/#SmallMolecule5; #BiochemicalReaction2/bp:conversionDirection
sulfate uptake in the cytosol
Reactome:R-MTU-936631
produces

SO4(2-)
Reactome:R-ALL-174375
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction2 places physical entity SmallMolecule6 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction2/bp:right/#SmallMolecule6; #BiochemicalReaction2/bp:conversionDirection
ATP(4-)
CHEBI:30616
consumes

sulfate is activated to APS
Reactome:R-MTU-936729
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction3 places physical entity SmallMolecule2 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction3/bp:left/#SmallMolecule2; #BiochemicalReaction3/bp:conversionDirection
SO4(2-)
Reactome:R-ALL-174375
consumes

sulfate is activated to APS
Reactome:R-MTU-936729
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction3 places physical entity SmallMolecule6 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction3/bp:left/#SmallMolecule6; #BiochemicalReaction3/bp:conversionDirection
sulfate is activated to APS
Reactome:R-MTU-936729
produces

5'-adenylyl sulfate(2-)
CHEBI:58243
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction3 places physical entity SmallMolecule7 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction3/bp:right/#SmallMolecule7; #BiochemicalReaction3/bp:conversionDirection
sulfate is activated to APS
Reactome:R-MTU-936729
produces

diphosphate(3-)
CHEBI:33019
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction3 places physical entity SmallMolecule8 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction3/bp:right/#SmallMolecule8; #BiochemicalReaction3/bp:conversionDirection
sulfate is activated to APS
Reactome:R-MTU-936729
occurs_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: All physical entities on both sides of BioPAX BiochemicalReaction3 have the same cellular location.

    Source location#BiochemicalReaction3/bp:left|bp:right; physicalEntity/bp:cellularLocation/#CellularLocationVocabulary3
ATP(4-)
CHEBI:30616
consumes

APS is phosphorylated to PAPS
Reactome:R-MTU-936583
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction4 places physical entity SmallMolecule2 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction4/bp:left/#SmallMolecule2; #BiochemicalReaction4/bp:conversionDirection
5'-adenylyl sulfate(2-)
CHEBI:58243
consumes

APS is phosphorylated to PAPS
Reactome:R-MTU-936583
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction4 places physical entity SmallMolecule7 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction4/bp:left/#SmallMolecule7; #BiochemicalReaction4/bp:conversionDirection
water
CHEBI:15377
consumes

Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.

sulfate is activated to APS
Reactome:R-MTU-936729
  • UniProtKB:P9WNM5

    Source assertion: The structured FUNCTION annotation couples CysN GTP hydrolysis to CysD-mediated APS synthesis (ECO:0000250). This edge assigns the reactant CHEBI:15377 of that hydrolysis component to the APS-synthesis event.

    Source location$.results[5].comments[0].texts[0]
GTP(4-)
CHEBI:37565
consumes

Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.

sulfate is activated to APS
Reactome:R-MTU-936729
  • UniProtKB:P9WNM5

    Source assertion: The structured FUNCTION annotation couples CysN GTP hydrolysis to CysD-mediated APS synthesis (ECO:0000250). This edge assigns the reactant CHEBI:37565 of that hydrolysis component to the APS-synthesis event.

    Source location$.results[5].comments[0].texts[0]
  • PMID:15615729
    The stoichiometry of GTP hydrolysis and APS synthesis is 1:1
APS is phosphorylated to PAPS
Reactome:R-MTU-936583
produces

ADP(3-)
CHEBI:456216
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction4 places physical entity SmallMolecule4 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction4/bp:right/#SmallMolecule4; #BiochemicalReaction4/bp:conversionDirection
APS is phosphorylated to PAPS
Reactome:R-MTU-936583
produces

Qualitative hydron product supported by the APS kinase reaction. Reactome source multiplicity of two is not retained. APS-synthesis proton consumption and coupled GTP-hydrolysis proton production are netted; this graph has no explicit stoichiometric model.

hydron
CHEBI:15378
  • UniProtKB:P9WNM5

    Source assertion: The CATALYTIC ACTIVITY reaction for EC:2.7.1.25 lists APS and ATP as reactants and PAPS, ADP and H(+) as products (RHEA:24152).

    Source location$.results[5].comments[3].reaction
sulfate is activated to APS
Reactome:R-MTU-936729
produces

Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.

hydrogenphosphate
CHEBI:43474
  • UniProtKB:P9WNM5

    Source assertion: The structured FUNCTION annotation couples CysN GTP hydrolysis to CysD-mediated APS synthesis (ECO:0000250). This edge assigns the product CHEBI:43474 of that hydrolysis component to the APS-synthesis event.

    Source location$.results[5].comments[0].texts[0]
APS is phosphorylated to PAPS
Reactome:R-MTU-936583
produces

3'-phosphonato-5'-adenylyl sulfate(4-)
CHEBI:58339
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction4 places physical entity SmallMolecule11 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction4/bp:right/#SmallMolecule11; #BiochemicalReaction4/bp:conversionDirection
sulfate is activated to APS
Reactome:R-MTU-936729
produces

Corrected placement of the GTP-hydrolysis component from APS kinase to the coupled APS-synthesis event. This qualitative edge does not specify a stoichiometric coefficient.

GDP(3-)
CHEBI:58189
  • UniProtKB:P9WNM5

    Source assertion: The structured FUNCTION annotation couples CysN GTP hydrolysis to CysD-mediated APS synthesis (ECO:0000250). This edge assigns the product CHEBI:58189 of that hydrolysis component to the APS-synthesis event.

    Source location$.results[5].comments[0].texts[0]
APS is phosphorylated to PAPS
Reactome:R-MTU-936583
occurs_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: All physical entities on both sides of BioPAX BiochemicalReaction4 have the same cellular location.

    Source location#BiochemicalReaction4/bp:left|bp:right; physicalEntity/bp:cellularLocation/#CellularLocationVocabulary3
water
CHEBI:15377
consumes

PAPS is dephosphorylated to APS
Reactome:R-MTU-936659
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction5 places physical entity SmallMolecule3 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction5/bp:left/#SmallMolecule3; #BiochemicalReaction5/bp:conversionDirection
3'-phosphonato-5'-adenylyl sulfate(4-)
CHEBI:58339
consumes

PAPS is dephosphorylated to APS
Reactome:R-MTU-936659
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction5 places physical entity SmallMolecule11 on its left side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction5/bp:left/#SmallMolecule11; #BiochemicalReaction5/bp:conversionDirection
PAPS is dephosphorylated to APS
Reactome:R-MTU-936659
produces

5'-adenylyl sulfate(2-)
CHEBI:58243
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction5 places physical entity SmallMolecule7 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction5/bp:right/#SmallMolecule7; #BiochemicalReaction5/bp:conversionDirection
PAPS is dephosphorylated to APS
Reactome:R-MTU-936659
produces

hydrogenphosphate
CHEBI:43474
  • Reactome:R-MTU-936635

    Source assertion: BioPAX BiochemicalReaction5 places physical entity SmallMolecule5 on its right side; conversion direction is LEFT-TO-RIGHT; displayed orientation is LEFT-TO-RIGHT.

    Source location#BiochemicalReaction5/bp:right/#SmallMolecule5; #BiochemicalReaction5/bp:conversionDirection
PAPS is dephosphorylated to APS
Reactome:R-MTU-936659
occurs_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: All physical entities on both sides of BioPAX BiochemicalReaction5 have the same cellular location.

    Source location#BiochemicalReaction5/bp:left|bp:right; physicalEntity/bp:cellularLocation/#CellularLocationVocabulary3
sulfate ABC transporter
Reactome:R-MTU-936707
catalyzes

sulfate uptake in the cytosol
Reactome:R-MTU-936631
  • Reactome:R-MTU-936635

    Source assertion: BioPAX Catalysis1 names Complex2 as its catalytic controller.

    Source location#Catalysis1/bp:controller/#Complex2; bp:controlled/#BiochemicalReaction2
sulfate adenylyltransferase complex
Reactome:R-MTU-936606
catalyzes

sulfate is activated to APS
Reactome:R-MTU-936729
  • Reactome:R-MTU-936635

    Source assertion: BioPAX Catalysis2 names Complex3 as its catalytic controller.

    Source location#Catalysis2/bp:controller/#Complex3; bp:controlled/#BiochemicalReaction3
sulfate adenylyltransferase complex
Reactome:R-MTU-936606
catalyzes

APS is phosphorylated to PAPS
Reactome:R-MTU-936583
  • Reactome:R-MTU-936635

    Source assertion: BioPAX Catalysis3 names Complex3 as its catalytic controller.

    Source location#Catalysis3/bp:controller/#Complex3; bp:controlled/#BiochemicalReaction4
CysQ dimer
Reactome:R-MTU-936691
catalyzes

Source CysQ PAPS hydrolysis assignment has qualitative biochemical support (PMID18454554). PAP, not PAPS, was quantitatively characterized; membrane localization and oligomer context are retained as Reactome assertions.

PAPS is dephosphorylated to APS
Reactome:R-MTU-936659
  • Reactome:R-MTU-936635

    Source assertion: BioPAX Catalysis4 names Complex4 as its catalytic controller.

    Source location#Catalysis4/bp:controller/#Complex4; bp:controlled/#BiochemicalReaction5
GTP(4-)
CHEBI:37565
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule9 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule9/bp:cellularLocation/#CellularLocationVocabulary3
diphosphate(3-)
CHEBI:33019
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule8 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule8/bp:cellularLocation/#CellularLocationVocabulary3
5'-adenylyl sulfate(2-)
CHEBI:58243
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule7 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule7/bp:cellularLocation/#CellularLocationVocabulary3
SO4(2-)
Reactome:R-ALL-174375
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule6 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule6/bp:cellularLocation/#CellularLocationVocabulary3
hydrogenphosphate
CHEBI:43474
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule5 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule5/bp:cellularLocation/#CellularLocationVocabulary3
ADP(3-)
CHEBI:456216
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule4 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule4/bp:cellularLocation/#CellularLocationVocabulary3
water
CHEBI:15377
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule3 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule3/bp:cellularLocation/#CellularLocationVocabulary3
ATP(4-)
CHEBI:30616
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule2 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule2/bp:cellularLocation/#CellularLocationVocabulary3
GDP(3-)
CHEBI:58189
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule12 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule12/bp:cellularLocation/#CellularLocationVocabulary3
3'-phosphonato-5'-adenylyl sulfate(4-)
CHEBI:58339
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule11 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule11/bp:cellularLocation/#CellularLocationVocabulary3
hydron
CHEBI:15378
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule10 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule10/bp:cellularLocation/#CellularLocationVocabulary3
SO4(2-)
Reactome:R-ALL-427648
located_in

extracellular region
GO:0005576
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule1 is assigned to cellular location CellularLocationVocabulary2.

    Source location#SmallMolecule1/bp:cellularLocation/#CellularLocationVocabulary2
SubI
Reactome:R-MTU-936726
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Protein1 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Protein1/bp:cellularLocation/#CellularLocationVocabulary1
CysQ dimer
Reactome:R-MTU-936691
has_part

CysQ-Mg++
Reactome:R-MTU-936671
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex4 explicitly includes physical entity Complex5.

    Source location#Complex4/bp:component/#Complex5
CysQ dimer
Reactome:R-MTU-936691
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Complex4 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Complex4/bp:cellularLocation/#CellularLocationVocabulary1
CysQ-Mg++
Reactome:R-MTU-936671
has_part

magnesium(2+)
CHEBI:18420
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex5 explicitly includes physical entity SmallMolecule13.

    Source location#Complex5/bp:component/#SmallMolecule13
CysQ-Mg++
Reactome:R-MTU-936671
has_part

CysQ
Reactome:R-MTU-936577
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex5 explicitly includes physical entity Protein7.

    Source location#Complex5/bp:component/#Protein7
CysQ-Mg++
Reactome:R-MTU-936671
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Complex5 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Complex5/bp:cellularLocation/#CellularLocationVocabulary1
CysQ
Reactome:R-MTU-936577
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Protein7 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Protein7/bp:cellularLocation/#CellularLocationVocabulary1
magnesium(2+)
CHEBI:18420
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity SmallMolecule13 is assigned to cellular location CellularLocationVocabulary3.

    Source location#SmallMolecule13/bp:cellularLocation/#CellularLocationVocabulary3
sulfate adenylyltransferase complex
Reactome:R-MTU-936606
has_part

CysNC
Reactome:R-MTU-936597
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex3 explicitly includes physical entity Protein5.

    Source location#Complex3/bp:component/#Protein5
sulfate adenylyltransferase complex
Reactome:R-MTU-936606
has_part

CysD
Reactome:R-MTU-936698
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex3 explicitly includes physical entity Protein6.

    Source location#Complex3/bp:component/#Protein6
sulfate adenylyltransferase complex
Reactome:R-MTU-936606
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Complex3 is assigned to cellular location CellularLocationVocabulary3.

    Source location#Complex3/bp:cellularLocation/#CellularLocationVocabulary3
CysD
Reactome:R-MTU-936698
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Protein6 is assigned to cellular location CellularLocationVocabulary3.

    Source location#Protein6/bp:cellularLocation/#CellularLocationVocabulary3
CysNC
Reactome:R-MTU-936597
located_in

cytosol
GO:0005829
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Protein5 is assigned to cellular location CellularLocationVocabulary3.

    Source location#Protein5/bp:cellularLocation/#CellularLocationVocabulary3
sulfate ABC transporter
Reactome:R-MTU-936707
has_part

CysT
Reactome:R-MTU-936743
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex2 explicitly includes physical entity Protein2.

    Source location#Complex2/bp:component/#Protein2
sulfate ABC transporter
Reactome:R-MTU-936707
has_part

CysA
Reactome:R-MTU-936656
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex2 explicitly includes physical entity Protein3.

    Source location#Complex2/bp:component/#Protein3
sulfate ABC transporter
Reactome:R-MTU-936707
has_part

CysW
Reactome:R-MTU-936681
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex2 explicitly includes physical entity Protein4.

    Source location#Complex2/bp:component/#Protein4
sulfate ABC transporter
Reactome:R-MTU-936707
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Complex2 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Complex2/bp:cellularLocation/#CellularLocationVocabulary1
CysW
Reactome:R-MTU-936681
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Protein4 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Protein4/bp:cellularLocation/#CellularLocationVocabulary1
CysA
Reactome:R-MTU-936656
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Protein3 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Protein3/bp:cellularLocation/#CellularLocationVocabulary1
CysT
Reactome:R-MTU-936743
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Protein2 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Protein2/bp:cellularLocation/#CellularLocationVocabulary1
SubI--sulfate complex
Reactome:R-MTU-936589
has_part

SubI
Reactome:R-MTU-936726
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex1 explicitly includes physical entity Protein1.

    Source location#Complex1/bp:component/#Protein1
SubI--sulfate complex
Reactome:R-MTU-936589
has_part

SO4(2-)
Reactome:R-ALL-427648
  • Reactome:R-MTU-936635

    Source assertion: BioPAX complex Complex1 explicitly includes physical entity SmallMolecule1.

    Source location#Complex1/bp:component/#SmallMolecule1
SubI--sulfate complex
Reactome:R-MTU-936589
located_in

plasma membrane
GO:0005886
  • Reactome:R-MTU-936635

    Source assertion: BioPAX physical entity Complex1 is assigned to cellular location CellularLocationVocabulary1.

    Source location#Complex1/bp:cellularLocation/#CellularLocationVocabulary1
sulfate binds to SubI outside the membrane
Reactome:R-MTU-936667
provides_input_for

Source-ordered material transfer through Reactome:R-MTU-936589; no regulatory sign or stoichiometric coefficient is asserted.

sulfate uptake in the cytosol
Reactome:R-MTU-936631
  • Reactome:R-MTU-936635

    Source assertion: BioPAX PathwayStep1 explicitly lists PathwayStep2 as nextStep; the linked reactions produce and consume the same source physical entity.

    Source location#PathwayStep1/bp:nextStep/#PathwayStep2; #BiochemicalReaction1/bp:right/#Complex1; #BiochemicalReaction1/bp:conversionDirection; #BiochemicalReaction2/bp:left/#Complex1; #BiochemicalReaction2/bp:conversionDirection
sulfate uptake in the cytosol
Reactome:R-MTU-936631
provides_input_for

Source-ordered material transfer through Reactome:R-ALL-174375; no regulatory sign or stoichiometric coefficient is asserted.

sulfate is activated to APS
Reactome:R-MTU-936729
  • Reactome:R-MTU-936635

    Source assertion: BioPAX PathwayStep2 explicitly lists PathwayStep3 as nextStep; the linked reactions produce and consume the same source physical entity.

    Source location#PathwayStep2/bp:nextStep/#PathwayStep3; #BiochemicalReaction2/bp:right/#SmallMolecule6; #BiochemicalReaction2/bp:conversionDirection; #BiochemicalReaction3/bp:left/#SmallMolecule6; #BiochemicalReaction3/bp:conversionDirection
sulfate is activated to APS
Reactome:R-MTU-936729
provides_input_for

Source-ordered material transfer through CHEBI:58243; no regulatory sign or stoichiometric coefficient is asserted.

APS is phosphorylated to PAPS
Reactome:R-MTU-936583
  • Reactome:R-MTU-936635

    Source assertion: BioPAX PathwayStep3 explicitly lists PathwayStep4 as nextStep; the linked reactions produce and consume the same source physical entity.

    Source location#PathwayStep3/bp:nextStep/#PathwayStep4; #BiochemicalReaction3/bp:right/#SmallMolecule7; #BiochemicalReaction3/bp:conversionDirection; #BiochemicalReaction4/bp:left/#SmallMolecule7; #BiochemicalReaction4/bp:conversionDirection

References

Curation history