Peptidoglycan cytoplasmic synthesis and recycling pathways
WikiPathways:WP5060
Peptidoglycan cytoplasmic synthesis and recycling in Escherichia coli links UDP-GlcNAc, UDP-MurNAc peptide intermediates, lipid II, peptidoglycan, and anhydro-N-acetylmuramate recycling reactions in the WP5060 GPML diagram.
- Pathway type
- cell wall biosynthesis
- Organism scope
Pathway network
109 nodes · 127 asserted directed edges
Arrows show recorded subject → object relationships, not necessarily metabolic flow. Select a node for details or an arrow for evidence. Scroll, zoom or find a node to explore.
- Reaction / activity
- Chemical / cofactor
- Protein / complex
- Solid arrow: mechanistic relation
- Dashed arrow: membership, location or cofactor relation
Components and activities
| Node | Kind or role | Source direction |
|---|---|---|
Escherichia coliNCBITaxon:562 | taxon | |
anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/a45c7 | small molecule | |
D-alanineCHEBI:15570 | small molecule | |
glmSUniProtKB:P17169 | protein | |
glmUUniProtKB:P0ACC7 | protein | |
glutamineCHEBI:28300 | small molecule | |
L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/de8b0 | small molecule | |
glmMUniProtKB:P31120 | protein | |
murFUniProtKB:P11880 | protein | |
D-glucosamine-6-phosphateCHEBI:20995 | small molecule | |
UDP-N-acetylmuramoyl-L-alanineCHEBI:16932 | small molecule | |
L-glutamateCHEBI:29985 | small molecule | |
D-Ala-D-AlaCHEBI:16576 | small molecule | |
meso-2,6-diaminopimelic acidCHEBI:16488 | small molecule | |
Penicillin-binding protein 1CUniProtKB:P76577 | protein | |
L-alanineCHEBI:16977 | small molecule | |
Penicillin-binding protein 1BUniProtKB:P02919 | protein | |
Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineCHEBI:28138 | small molecule | |
UTPCHEBI:46398 | small molecule | |
Undecaprenyl phosphateCHEBI:16141 | small molecule | |
Glucosamine-1PCHEBI:174383 | small molecule | |
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineCHEBI:61543 | small molecule | |
UDP-MurNAc-L-Ala-D-GluCHEBI:16970 | small molecule | |
Undecaprenyl pyrophosphateCHEBI:17047 | small molecule | |
Fructose-6-phosphateCHEBI:15946 | small molecule | |
D-glutamateCHEBI:29986 | small molecule | |
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAPCHEBI:28639 | small molecule | |
UDP-GlcNAcCHEBI:16264 | small molecule | |
UDP-MurNAcCHEBI:70765 | small molecule | |
Undecaprenyl-diphosphataseUniProtKB:P60932 | protein | |
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-AlaCHEBI:18199 | small molecule | |
Penicillin-binding protein 1AUniProtKB:P02918 | protein | |
phosphoenolpyruvateCHEBI:58702 | small molecule | |
UDP-GlcNAc-enolpyruvateCHEBI:68483 | small molecule | |
NADPHCHEBI:16474 | small molecule | |
N-acetylglucosamine-1-phosphateCHEBI:16446 | small molecule | |
Peptidoglycan LayerCHEBI:8005 | small molecule | |
acetyl-CoACHEBI:15351 | small molecule | |
N-acetyl-D-glucosamine 6-phosphateCHEBI:15784 | small molecule | |
MurNAc 6-phosphateCHEBI:47968 | small molecule | |
GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/e9564 | small molecule | |
N-acetylmuramic acidCHEBI:47965 | small molecule | |
Penicillin-binding protein 2 (Peptidoglycan D,D-transpeptidase MrdA)UniProtKB:Q2TL65 | protein | |
Penicillin-binding protein 3 (Peptidoglycan D,D-transpeptidase FtsI)UniProtKB:P0AD68 | protein | |
murEUniProtKB:P22188 | protein | |
murDUniProtKB:P14900 | protein | |
murCUniProtKB:P17952 | protein | |
murBUniProtKB:P08373 | protein | |
murAUniProtKB:P0A749 | protein | |
murGUniProtKB:P17443 | protein | |
mraYUniProtKB:P0A6W3 | protein | |
ddlBUniProtKB:P07862 | protein | |
dadXUniProtKB:P29012 | protein | |
alrUniProtKB:P0A6B4 | protein | |
murIUniProtKB:P22634 | protein | |
ampGUniProtKB:P0AE16 | protein | |
mplUniProtKB:P37773 | protein | |
murJUniProtKB:P0AF16 | protein | |
ftsWUniProtKB:P0ABG4 | protein | |
mtgAUniProtKB:P46022 | protein | |
murPUniProtKB:P77272 | protein | |
anmKUniProtKB:P77570 | protein | |
murQUniProtKB:P76535 | protein | |
nagAUniProtKB:P0AF18 | protein | |
nagBUniProtKB:P0A759 | protein | |
nagKUniProtKB:P75959 | protein | |
1,6-anhMurNAcCHEBI:40666 | small molecule | |
nagZUniProtKB:P75949 | protein | |
GlcNAcCHEBI:506227 | small molecule | |
1,6-anhydro-N-acetylmuramyl-L-alanine amidase (AmpD)UniProtKB:P13016 | protein | |
L-alanyl-gamma-D-glutamyl-meso-diaminopimelic acidCHEBI:61564 | small molecule | |
Murein tetrapeptide carboxypeptidase (LdcA)UniProtKB:P76008 | protein | |
magnesium(2+)CHEBI:18420 | cofactor | |
cobalt(2+)CHEBI:48828 | cofactor | |
FAD(3-)CHEBI:57692 | cofactor | |
manganese(2+)CHEBI:29035 | cofactor | |
pyridoxal 5'-phosphate(2-)CHEBI:597326 | cofactor | |
zinc(2+)CHEBI:29105 | cofactor | |
cadmium(2+)CHEBI:48775 | cofactor | |
iron(2+)CHEBI:29033 | cofactor | |
nickel(2+)CHEBI:49786 | cofactor | |
D-glucosamine-6-phosphate to Fructose-6-phosphate GPML interactionWikiPathways:WP5060/ac9d2 | molecular activity | left to right |
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala to UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/adda4 | molecular activity | left to right |
Fructose-6-phosphate to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/af0e7 | molecular activity | left to right |
1,6-anhMurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/af315 | molecular activity | left to right |
WP5060 b423c GPML interactionWikiPathways:WP5060/b423c | molecular activity | left to right |
WP5060 b5af5 GPML interactionWikiPathways:WP5060/b5af5 | molecular activity | left to right |
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/b8180 | molecular activity | left to right |
UDP-GlcNAc-enolpyruvate to UDP-MurNAc GPML interactionWikiPathways:WP5060/b8d40 | molecular activity | left to right |
Glucosamine-1P to N-acetylglucosamine-1-phosphate GPML interactionWikiPathways:WP5060/bcf55 | molecular activity | left to right |
GlcNAc to GlcNAc-6-P GPML interactionWikiPathways:WP5060/c0f79 | molecular activity | left to right |
GlcNAc-6-P to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/c131c | molecular activity | left to right |
D-alanine to D-Ala-D-Ala GPML interactionWikiPathways:WP5060/cdc0a | molecular activity | left to right |
UDP-MurNAc to UDP-MurNAc-L-Ala GPML interactionWikiPathways:WP5060/d013c | molecular activity | left to right |
L-glutamate to D-glutamate GPML interactionWikiPathways:WP5060/d5182 | molecular activity | reversible |
Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 | molecular activity | left to right |
UDP-GlcNAc to UDP-GlcNAc-enolpyruvate GPML interactionWikiPathways:WP5060/e2f23 | molecular activity | left to right |
L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/e8b23 | molecular activity | left to right |
MurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/eab24 | molecular activity | left to right |
UDP-MurNAc-L-Ala to UDP-MurNAc-L-Ala-D-Glu GPML interactionWikiPathways:WP5060/eb85c | molecular activity | left to right |
D-glucosamine-6-phosphate to Glucosamine-1P GPML interactionWikiPathways:WP5060/ebc50 | molecular activity | reversible |
UDP-MurNAc-L-Ala-D-Glu to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/eff80 | molecular activity | left to right |
Peptidoglycan Layer to GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala GPML interactionWikiPathways:WP5060/f4fde | molecular activity | left to right |
UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala to Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine GPML interactionWikiPathways:WP5060/f53c7 | molecular activity | left to right |
N-acetylglucosamine-1-phosphate to UDP-GlcNAc GPML interactionWikiPathways:WP5060/f628a | molecular activity | left to right |
Undecaprenyl pyrophosphate to Undecaprenyl phosphate GPML interactionWikiPathways:WP5060/fb09e | molecular activity | left to right |
WP5060 ffa50 GPML interactionWikiPathways:WP5060/ffa50 | molecular activity | left to right |
L-alanine to D-alanine GPML interactionWikiPathways:WP5060/id535c37a4 | molecular activity | reversible |
anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala to 1,6-anhMurNAc GPML interactionWikiPathways:WP5060/id92720196 | molecular activity | left to right |
MurNAc 6-phosphate to GlcNAc-6-P GPML interactionWikiPathways:WP5060/idb435b98e | molecular activity | left to right |
Mechanistic edges
| Subject | Predicate and description | Object | Evidence |
|---|---|---|---|
D-glucosamine-6-phosphateCHEBI:20995 | consumes | D-glucosamine-6-phosphate to Fructose-6-phosphate GPML interactionWikiPathways:WP5060/ac9d2 |
|
D-glucosamine-6-phosphate to Fructose-6-phosphate GPML interactionWikiPathways:WP5060/ac9d2 | produces | Fructose-6-phosphateCHEBI:15946 |
|
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-AlaCHEBI:18199 | consumes | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala to UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/adda4 |
|
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala to UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/adda4 | produces | undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineCHEBI:61543 |
|
Fructose-6-phosphateCHEBI:15946 | consumes | Fructose-6-phosphate to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/af0e7 |
|
Fructose-6-phosphate to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/af0e7 | produces | D-glucosamine-6-phosphateCHEBI:20995 |
|
1,6-anhMurNAcCHEBI:40666 | consumes | 1,6-anhMurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/af315 |
|
1,6-anhMurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/af315 | produces | MurNAc 6-phosphateCHEBI:47968 |
|
L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/de8b0 | consumes | WP5060 b423c GPML interactionWikiPathways:WP5060/b423c |
|
WP5060 b423c GPML interactionWikiPathways:WP5060/b423c | produces | L-alanyl-gamma-D-glutamyl-meso-diaminopimelic acidCHEBI:61564 |
|
GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/e9564 | consumes | WP5060 b5af5 GPML interactionWikiPathways:WP5060/b5af5 |
|
WP5060 b5af5 GPML interactionWikiPathways:WP5060/b5af5 | produces | GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/e9564 |
|
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAPCHEBI:28639 | consumes | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/b8180 |
|
UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/b8180 | produces | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-AlaCHEBI:18199 |
|
UDP-GlcNAc-enolpyruvateCHEBI:68483 | consumes | UDP-GlcNAc-enolpyruvate to UDP-MurNAc GPML interactionWikiPathways:WP5060/b8d40 |
|
UDP-GlcNAc-enolpyruvate to UDP-MurNAc GPML interactionWikiPathways:WP5060/b8d40 | produces | UDP-MurNAcCHEBI:70765 |
|
Glucosamine-1PCHEBI:174383 | consumes | Glucosamine-1P to N-acetylglucosamine-1-phosphate GPML interactionWikiPathways:WP5060/bcf55 |
|
Glucosamine-1P to N-acetylglucosamine-1-phosphate GPML interactionWikiPathways:WP5060/bcf55 | produces | N-acetylglucosamine-1-phosphateCHEBI:16446 |
|
GlcNAcCHEBI:506227 | consumes | GlcNAc to GlcNAc-6-P GPML interactionWikiPathways:WP5060/c0f79 |
|
GlcNAc to GlcNAc-6-P GPML interactionWikiPathways:WP5060/c0f79 | produces | N-acetyl-D-glucosamine 6-phosphateCHEBI:15784 |
|
N-acetyl-D-glucosamine 6-phosphateCHEBI:15784 | consumes | GlcNAc-6-P to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/c131c |
|
GlcNAc-6-P to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/c131c | produces | D-glucosamine-6-phosphateCHEBI:20995 |
|
D-alanineCHEBI:15570 | consumes | D-alanine to D-Ala-D-Ala GPML interactionWikiPathways:WP5060/cdc0a |
|
D-alanine to D-Ala-D-Ala GPML interactionWikiPathways:WP5060/cdc0a | produces | D-Ala-D-AlaCHEBI:16576 |
|
UDP-MurNAcCHEBI:70765 | consumes | UDP-MurNAc to UDP-MurNAc-L-Ala GPML interactionWikiPathways:WP5060/d013c |
|
UDP-MurNAc to UDP-MurNAc-L-Ala GPML interactionWikiPathways:WP5060/d013c | produces | UDP-N-acetylmuramoyl-L-alanineCHEBI:16932 |
|
L-glutamateCHEBI:29985 | consumes The source has arrowheads on both endpoints; the displayed orientation is one direction of a reversible conversion. | L-glutamate to D-glutamate GPML interactionWikiPathways:WP5060/d5182 |
|
L-glutamate to D-glutamate GPML interactionWikiPathways:WP5060/d5182 | produces The source has arrowheads on both endpoints; the displayed orientation is one direction of a reversible conversion. | D-glutamateCHEBI:29986 |
|
Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineCHEBI:28138 | consumes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
|
Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 | produces | Peptidoglycan LayerCHEBI:8005 |
|
UDP-GlcNAcCHEBI:16264 | consumes | UDP-GlcNAc to UDP-GlcNAc-enolpyruvate GPML interactionWikiPathways:WP5060/e2f23 |
|
UDP-GlcNAc to UDP-GlcNAc-enolpyruvate GPML interactionWikiPathways:WP5060/e2f23 | produces | UDP-GlcNAc-enolpyruvateCHEBI:68483 |
|
L-alanyl-gamma-D-glutamyl-meso-diaminopimelic acidCHEBI:61564 | consumes | L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/e8b23 |
|
L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/e8b23 | produces | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAPCHEBI:28639 |
|
N-acetylmuramic acidCHEBI:47965 | consumes | MurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/eab24 |
|
MurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/eab24 | produces | MurNAc 6-phosphateCHEBI:47968 |
|
UDP-N-acetylmuramoyl-L-alanineCHEBI:16932 | consumes | UDP-MurNAc-L-Ala to UDP-MurNAc-L-Ala-D-Glu GPML interactionWikiPathways:WP5060/eb85c |
|
UDP-MurNAc-L-Ala to UDP-MurNAc-L-Ala-D-Glu GPML interactionWikiPathways:WP5060/eb85c | produces | UDP-MurNAc-L-Ala-D-GluCHEBI:16970 |
|
D-glucosamine-6-phosphateCHEBI:20995 | consumes The source has arrowheads on both endpoints; the displayed orientation is one direction of a reversible conversion. | D-glucosamine-6-phosphate to Glucosamine-1P GPML interactionWikiPathways:WP5060/ebc50 |
|
D-glucosamine-6-phosphate to Glucosamine-1P GPML interactionWikiPathways:WP5060/ebc50 | produces The source has arrowheads on both endpoints; the displayed orientation is one direction of a reversible conversion. | Glucosamine-1PCHEBI:174383 |
|
UDP-MurNAc-L-Ala-D-GluCHEBI:16970 | consumes | UDP-MurNAc-L-Ala-D-Glu to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/eff80 |
|
UDP-MurNAc-L-Ala-D-Glu to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/eff80 | produces | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAPCHEBI:28639 |
|
Peptidoglycan LayerCHEBI:8005 | consumes | Peptidoglycan Layer to GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala GPML interactionWikiPathways:WP5060/f4fde |
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Peptidoglycan Layer to GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala GPML interactionWikiPathways:WP5060/f4fde | produces | GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/e9564 |
|
undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineCHEBI:61543 | consumes | UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala to Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine GPML interactionWikiPathways:WP5060/f53c7 |
|
UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala to Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine GPML interactionWikiPathways:WP5060/f53c7 | produces | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineCHEBI:28138 |
|
N-acetylglucosamine-1-phosphateCHEBI:16446 | consumes | N-acetylglucosamine-1-phosphate to UDP-GlcNAc GPML interactionWikiPathways:WP5060/f628a |
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N-acetylglucosamine-1-phosphate to UDP-GlcNAc GPML interactionWikiPathways:WP5060/f628a | produces | UDP-GlcNAcCHEBI:16264 |
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Undecaprenyl pyrophosphateCHEBI:17047 | consumes | Undecaprenyl pyrophosphate to Undecaprenyl phosphate GPML interactionWikiPathways:WP5060/fb09e |
|
Undecaprenyl pyrophosphate to Undecaprenyl phosphate GPML interactionWikiPathways:WP5060/fb09e | produces | Undecaprenyl phosphateCHEBI:16141 |
|
GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/e9564 | consumes | WP5060 ffa50 GPML interactionWikiPathways:WP5060/ffa50 |
|
WP5060 ffa50 GPML interactionWikiPathways:WP5060/ffa50 | produces | anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/a45c7 |
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L-alanineCHEBI:16977 | consumes The source has arrowheads on both endpoints; the displayed orientation is one direction of a reversible conversion. | L-alanine to D-alanine GPML interactionWikiPathways:WP5060/id535c37a4 |
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L-alanine to D-alanine GPML interactionWikiPathways:WP5060/id535c37a4 | produces The source has arrowheads on both endpoints; the displayed orientation is one direction of a reversible conversion. | D-alanineCHEBI:15570 |
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anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/a45c7 | consumes | anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala to 1,6-anhMurNAc GPML interactionWikiPathways:WP5060/id92720196 |
|
anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala to 1,6-anhMurNAc GPML interactionWikiPathways:WP5060/id92720196 | produces | 1,6-anhMurNAcCHEBI:40666 |
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MurNAc 6-phosphateCHEBI:47968 | consumes | MurNAc 6-phosphate to GlcNAc-6-P GPML interactionWikiPathways:WP5060/idb435b98e |
|
MurNAc 6-phosphate to GlcNAc-6-P GPML interactionWikiPathways:WP5060/idb435b98e | produces | N-acetyl-D-glucosamine 6-phosphateCHEBI:15784 |
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Murein tetrapeptide carboxypeptidase (LdcA)UniProtKB:P76008 | catalyzes | WP5060 b423c GPML interactionWikiPathways:WP5060/b423c |
|
alrUniProtKB:P0A6B4 | catalyzes | L-alanine to D-alanine GPML interactionWikiPathways:WP5060/id535c37a4 |
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nagZUniProtKB:P75949 | catalyzes | WP5060 ffa50 GPML interactionWikiPathways:WP5060/ffa50 |
|
anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala to 1,6-anhMurNAc GPML interactionWikiPathways:WP5060/id92720196 | produces | L-Ala-gamma-D-Glu-meso-DAP-D-AlaWikiPathways:WP5060/de8b0 |
|
1,6-anhydro-N-acetylmuramyl-L-alanine amidase (AmpD)UniProtKB:P13016 | catalyzes | anhMurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala to 1,6-anhMurNAc GPML interactionWikiPathways:WP5060/id92720196 |
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Penicillin-binding protein 2 (Peptidoglycan D,D-transpeptidase MrdA)UniProtKB:Q2TL65 | catalyzes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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UDP-MurNAcCHEBI:70765 | consumes | L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/e8b23 |
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glutamineCHEBI:28300 | consumes | Fructose-6-phosphate to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/af0e7 |
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WP5060 ffa50 GPML interactionWikiPathways:WP5060/ffa50 | produces | GlcNAcCHEBI:506227 |
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Penicillin-binding protein 3 (Peptidoglycan D,D-transpeptidase FtsI)UniProtKB:P0AD68 | catalyzes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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glmSUniProtKB:P17169 | catalyzes | Fructose-6-phosphate to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/af0e7 |
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mraYUniProtKB:P0A6W3 | catalyzes | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala to UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/adda4 |
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UTPCHEBI:46398 | consumes | N-acetylglucosamine-1-phosphate to UDP-GlcNAc GPML interactionWikiPathways:WP5060/f628a |
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meso-2,6-diaminopimelic acidCHEBI:16488 | consumes | UDP-MurNAc-L-Ala-D-Glu to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/eff80 |
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L-alanineCHEBI:16977 | consumes | UDP-MurNAc to UDP-MurNAc-L-Ala GPML interactionWikiPathways:WP5060/d013c |
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ddlBUniProtKB:P07862 | catalyzes | D-alanine to D-Ala-D-Ala GPML interactionWikiPathways:WP5060/cdc0a |
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murJUniProtKB:P0AF16 | enables | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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Undecaprenyl phosphateCHEBI:16141 | consumes | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala to UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/adda4 |
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Penicillin-binding protein 1AUniProtKB:P02918 | catalyzes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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murDUniProtKB:P14900 | catalyzes | UDP-MurNAc-L-Ala to UDP-MurNAc-L-Ala-D-Glu GPML interactionWikiPathways:WP5060/eb85c |
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murCUniProtKB:P17952 | catalyzes | UDP-MurNAc to UDP-MurNAc-L-Ala GPML interactionWikiPathways:WP5060/d013c |
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murAUniProtKB:P0A749 | catalyzes | UDP-GlcNAc to UDP-GlcNAc-enolpyruvate GPML interactionWikiPathways:WP5060/e2f23 |
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murBUniProtKB:P08373 | catalyzes | UDP-GlcNAc-enolpyruvate to UDP-MurNAc GPML interactionWikiPathways:WP5060/b8d40 |
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D-glutamateCHEBI:29986 | consumes | UDP-MurNAc-L-Ala to UDP-MurNAc-L-Ala-D-Glu GPML interactionWikiPathways:WP5060/eb85c |
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murIUniProtKB:P22634 | catalyzes | L-glutamate to D-glutamate GPML interactionWikiPathways:WP5060/d5182 |
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murEUniProtKB:P22188 | catalyzes | UDP-MurNAc-L-Ala-D-Glu to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/eff80 |
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D-Ala-D-AlaCHEBI:16576 | consumes | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/b8180 |
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Undecaprenyl-diphosphataseUniProtKB:P60932 | catalyzes | Undecaprenyl pyrophosphate to Undecaprenyl phosphate GPML interactionWikiPathways:WP5060/fb09e |
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murGUniProtKB:P17443 | catalyzes | UND-PP-MurNAc-L-Ala-D-Glu-meso-DAP-D-Ala-D-Ala to Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine GPML interactionWikiPathways:WP5060/f53c7 |
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Penicillin-binding protein 1CUniProtKB:P76577 | catalyzes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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glmUUniProtKB:P0ACC7 | catalyzes | N-acetylglucosamine-1-phosphate to UDP-GlcNAc GPML interactionWikiPathways:WP5060/f628a |
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acetyl-CoACHEBI:15351 | consumes | Glucosamine-1P to N-acetylglucosamine-1-phosphate GPML interactionWikiPathways:WP5060/bcf55 |
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phosphoenolpyruvateCHEBI:58702 | consumes | UDP-GlcNAc to UDP-GlcNAc-enolpyruvate GPML interactionWikiPathways:WP5060/e2f23 |
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mtgAUniProtKB:P46022 | catalyzes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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murFUniProtKB:P11880 | catalyzes | UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP-D-Ala-D-Ala GPML interactionWikiPathways:WP5060/b8180 |
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ftsWUniProtKB:P0ABG4 | catalyzes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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Penicillin-binding protein 1BUniProtKB:P02919 | catalyzes | Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine to Peptidoglycan Layer GPML interactionWikiPathways:WP5060/d89b1 |
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NADPHCHEBI:16474 | consumes | UDP-GlcNAc-enolpyruvate to UDP-MurNAc GPML interactionWikiPathways:WP5060/b8d40 |
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glmMUniProtKB:P31120 | catalyzes | D-glucosamine-6-phosphate to Glucosamine-1P GPML interactionWikiPathways:WP5060/ebc50 |
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glmUUniProtKB:P0ACC7 | catalyzes | Glucosamine-1P to N-acetylglucosamine-1-phosphate GPML interactionWikiPathways:WP5060/bcf55 |
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ampGUniProtKB:P0AE16 | catalyzes | WP5060 b5af5 GPML interactionWikiPathways:WP5060/b5af5 |
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nagAUniProtKB:P0AF18 | catalyzes | GlcNAc-6-P to D-glucosamine-6-phosphate GPML interactionWikiPathways:WP5060/c131c |
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murQUniProtKB:P76535 | catalyzes | MurNAc 6-phosphate to GlcNAc-6-P GPML interactionWikiPathways:WP5060/idb435b98e |
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anmKUniProtKB:P77570 | catalyzes | 1,6-anhMurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/af315 |
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murPUniProtKB:P77272 | catalyzes | MurNAc to MurNAc 6-phosphate GPML interactionWikiPathways:WP5060/eab24 |
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nagKUniProtKB:P75959 | catalyzes | GlcNAc to GlcNAc-6-P GPML interactionWikiPathways:WP5060/c0f79 |
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nagBUniProtKB:P0A759 | catalyzes | D-glucosamine-6-phosphate to Fructose-6-phosphate GPML interactionWikiPathways:WP5060/ac9d2 |
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mplUniProtKB:P37773 | catalyzes | L-Ala-gamma-D-Glu-meso-DAP to UDP-MurNAc-L-Ala-gamma-D-Glu-meso-DAP GPML interactionWikiPathways:WP5060/e8b23 |
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dadXUniProtKB:P29012 | catalyzes | L-alanine to D-alanine GPML interactionWikiPathways:WP5060/id535c37a4 |
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WP5060 b423c GPML interactionWikiPathways:WP5060/b423c | produces | D-alanineCHEBI:15570 |
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glmUUniProtKB:P0ACC7 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:17473010) Binds 1 Mg(2+) ion per subunit (PubMed:17473010). Can also use Co(2+) ion to a lesser extent (PubMed:11329257). UniProt note evidence: ECO:0000269 (PubMed:11329257); ECO:0000269 (PubMed:17473010) | magnesium(2+)CHEBI:18420 |
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glmUUniProtKB:P0ACC7 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:11329257) Binds 1 Mg(2+) ion per subunit (PubMed:17473010). Can also use Co(2+) ion to a lesser extent (PubMed:11329257). UniProt note evidence: ECO:0000269 (PubMed:11329257); ECO:0000269 (PubMed:17473010) | cobalt(2+)CHEBI:48828 |
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glmMUniProtKB:P31120 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 Binds 1 Mg(2+) ion per subunit. UniProt note evidence: ECO:0000250 | magnesium(2+)CHEBI:18420 |
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murEUniProtKB:P22188 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000255 (HAMAP-Rule:MF_00208) | magnesium(2+)CHEBI:18420 |
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murDUniProtKB:P14900 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000305 (PubMed:1765076) | magnesium(2+)CHEBI:18420 |
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murBUniProtKB:P08373 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: not specified | FAD(3-)CHEBI:57692 |
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mraYUniProtKB:P0A6W3 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000255 (HAMAP-Rule:MF_00038); ECO:0000269 (PubMed:215212) Replacement of Mg(2+) by Mn(2+) restores only 10% of the activity. UniProt note evidence: ECO:0000269 (PubMed:215212) | magnesium(2+)CHEBI:18420 |
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ddlBUniProtKB:P07862 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 Binds 2 magnesium or manganese ions per subunit. UniProt note evidence: ECO:0000250 | magnesium(2+)CHEBI:18420 |
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ddlBUniProtKB:P07862 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 Binds 2 magnesium or manganese ions per subunit. UniProt note evidence: ECO:0000250 | manganese(2+)CHEBI:29035 |
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dadXUniProtKB:P29012 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 | pyridoxal 5'-phosphate(2-)CHEBI:597326 |
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alrUniProtKB:P0A6B4 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:18434499) | pyridoxal 5'-phosphate(2-)CHEBI:597326 |
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mplUniProtKB:P37773 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000255 (HAMAP-Rule:MF_02020); ECO:0000269 (PubMed:17384195) | magnesium(2+)CHEBI:18420 |
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nagAUniProtKB:P0AF18 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) Binds 1 divalent metal cation per subunit. The highest efficient metals are Zn(2+) and Co(2+), followed by Mn(2+), Cd(2+), Fe(2+) and Ni(2+). UniProt note evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) | zinc(2+)CHEBI:29105 |
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nagAUniProtKB:P0AF18 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) Binds 1 divalent metal cation per subunit. The highest efficient metals are Zn(2+) and Co(2+), followed by Mn(2+), Cd(2+), Fe(2+) and Ni(2+). UniProt note evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) | cobalt(2+)CHEBI:48828 |
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nagAUniProtKB:P0AF18 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) Binds 1 divalent metal cation per subunit. The highest efficient metals are Zn(2+) and Co(2+), followed by Mn(2+), Cd(2+), Fe(2+) and Ni(2+). UniProt note evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) | manganese(2+)CHEBI:29035 |
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nagAUniProtKB:P0AF18 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) Binds 1 divalent metal cation per subunit. The highest efficient metals are Zn(2+) and Co(2+), followed by Mn(2+), Cd(2+), Fe(2+) and Ni(2+). UniProt note evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) | cadmium(2+)CHEBI:48775 |
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nagAUniProtKB:P0AF18 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) Binds 1 divalent metal cation per subunit. The highest efficient metals are Zn(2+) and Co(2+), followed by Mn(2+), Cd(2+), Fe(2+) and Ni(2+). UniProt note evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) | iron(2+)CHEBI:29033 |
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nagAUniProtKB:P0AF18 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) Binds 1 divalent metal cation per subunit. The highest efficient metals are Zn(2+) and Co(2+), followed by Mn(2+), Cd(2+), Fe(2+) and Ni(2+). UniProt note evidence: ECO:0000269 (PubMed:16630633); ECO:0000269 (PubMed:17567047); ECO:0000269 (PubMed:17567048) | nickel(2+)CHEBI:49786 |
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1,6-anhydro-N-acetylmuramyl-L-alanine amidase (AmpD)UniProtKB:P13016 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P82974) Zn(2+) is required for amidase activity. UniProt note evidence: ECO:0000250 (UniProtKB:P82974) | zinc(2+)CHEBI:29105 |
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References
PMID:31296364Bacteria's different ways to recycle their own cell wallPMID:18266853Cytoplasmic steps of peptidoglycan biosynthesisWikiPathways:WP5060WP5060 native structured pathway source (source version: WP5060_r142449)UniProtKB:P0ACC7UniProtKB P0ACC7 cofactor annotations (source version: 2026_03)UniProtKB:P31120UniProtKB P31120 cofactor annotations (source version: 2026_03)UniProtKB:P22188UniProtKB P22188 cofactor annotations (source version: 2026_03)UniProtKB:P14900UniProtKB P14900 cofactor annotations (source version: 2026_03)UniProtKB:P08373UniProtKB P08373 cofactor annotations (source version: 2026_03)UniProtKB:P0A6W3UniProtKB P0A6W3 cofactor annotations (source version: 2026_03)UniProtKB:P07862UniProtKB P07862 cofactor annotations (source version: 2026_03)UniProtKB:P29012UniProtKB P29012 cofactor annotations (source version: 2026_03)UniProtKB:P0A6B4UniProtKB P0A6B4 cofactor annotations (source version: 2026_03)UniProtKB:P37773UniProtKB P37773 cofactor annotations (source version: 2026_03)UniProtKB:P0AF18UniProtKB P0AF18 cofactor annotations (source version: 2026_03)UniProtKB:P13016UniProtKB P13016 cofactor annotations (source version: 2026_03)
Curation history
- Codex
- EDIT — Review complete causal graph against native sources and correct unsupported or omitted relationships
Restored missing cosubstrates where exact identity is available; reversed-arrow racemases and phosphoglucosamine mutase marked reversible. MurJ is transport support rather than an enzyme that polymerizes peptidoglycan. Cytoplasmic source is explicitly incomplete for membrane/periplasm steps; no omitted DNA/RNA nodes inferred. Every native record was inspected; see reports/causal-graph-diagram-review.json for native-object counts, exclusions and identity corrections. Semantic validation and native GraphId locator checks passed; authority snapshots and full corpus gates are coordinated separately.
- EDIT — Review complete causal graph against native sources and correct unsupported or omitted relationships