glycolysis I (from glucose 6-phosphate)
gomodel:YeastPathways_GLYCOLYSIS
SGD glycolysis I (from glucose 6-phosphate) in Saccharomyces cerevisiae S288C links PGI1, PFK27, FBP1, FBA1, TPI1, TDH1, TDH2, TDH3, PGK1, GPM1, ENO1, ENO2, CDC19, and PYK2 activities across fructose-phosphate, triose-phosphate, phosphoglycerate, phosphoenolpyruvate, and pyruvate chemistry.
- Pathway type
- central carbon metabolism
- Organism scope
Pathway network
56 nodes · 148 asserted directed edges
Arrows show recorded subject → object relationships, not necessarily metabolic flow. Select a node for details or an arrow for evidence. Scroll, zoom or find a node to explore.
- Reaction / activity
- Chemical / cofactor
- Protein / complex
- Cell / process context
- Solid arrow: mechanistic relation
- Dashed arrow: membership, location or cofactor relation
Components and activities
| Node | Kind or role | Source direction |
|---|---|---|
Saccharomyces cerevisiae S288CNCBITaxon:559292 | taxon | |
cytosolGO:0005829 | cellular component | |
GPM1 ScerSGD:S000001635 | protein | |
phosphonatoenolpyruvateCHEBI:58702 | small molecule | |
glycolytic process through glucose-6-phosphateGO:0061620 | biological process | |
NAD(1-)CHEBI:57540 | small molecule | |
FBP1 ScerSGD:S000004369 | protein | |
hydrogenphosphateCHEBI:43474 | small molecule | |
ADP(3-)CHEBI:456216 | small molecule | |
3-phosphonato-D-glycerate(3-)CHEBI:58272 | small molecule | |
PGK1 ScerSGD:S000000605 | protein | |
3-phosphonato-D-glyceroyl phosphate(4-)CHEBI:57604 | small molecule | |
CPX-554 ScerSGD:S000218025 | complex | |
PGI1 ScerSGD:S000000400 | protein | |
PYK2 ScerSGD:S000005874 | protein | |
waterCHEBI:15377 | small molecule | |
glycerone phosphate(2-)CHEBI:57642 | small molecule | |
pyruvateCHEBI:15361 | small molecule | |
beta-D-fructofuranose 1,6-bisphosphate(4-)CHEBI:32966 | small molecule | |
hydronCHEBI:15378 | small molecule | |
ATP(4-)CHEBI:30616 | small molecule | |
FBA1 ScerSGD:S000001543 | protein | |
D-glyceraldehyde 3-phosphate(2-)CHEBI:59776 | small molecule | |
NADH(2-)CHEBI:57945 | small molecule | |
2-phosphonato-D-glycerate(3-)CHEBI:58289 | small molecule | |
D-glucopyranose 6-phosphateCHEBI:4170 | small molecule | |
ENO1 ScerSGD:S000003486 | protein | |
beta-D-fructofuranose 6-phosphate(2-)CHEBI:57634 | small molecule | |
TDH1 ScerSGD:S000003588 | protein | |
TDH2 ScerSGD:S000003769 | protein | |
TPI1 ScerSGD:S000002457 | protein | |
TDH3 ScerSGD:S000003424 | protein | |
CDC19 ScerSGD:S000000036 | protein | |
ENO2 ScerSGD:S000001217 | protein | |
ATP-dependent 6-phosphofructokinase subunit alphaUniProtKB:P16861 | protein | |
ATP-dependent 6-phosphofructokinase subunit betaUniProtKB:P16862 | protein | |
cytoplasmGO:0005737 | cellular component | |
mitochondrial outer membraneGO:0005741 | cellular component | |
mitochondrial intermembrane spaceGO:0005758 | cellular component | |
mitochondrionGO:0005739 | cellular component | |
magnesium(2+)CHEBI:18420 | cofactor | |
potassium(1+)CHEBI:29103 | cofactor | |
zinc(2+)CHEBI:29105 | cofactor | |
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | molecular activity | |
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | molecular activity | |
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | molecular activity | |
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | molecular activity | |
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | molecular activity | |
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | molecular activity | |
glucose-6-phosphate isomerase activitygomodel:PGLUCISOM-RXN | molecular activity | |
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | molecular activity | |
phosphoglycerate mutase activitygomodel:RXN-15513 | molecular activity | |
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | molecular activity | |
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | molecular activity | |
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | molecular activity | |
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | molecular activity | |
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | molecular activity |
Mechanistic edges
| Subject | Predicate and description | Object | Evidence |
|---|---|---|---|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | provides_input_for | triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | occurs_in | cytosolGO:0005829 |
|
GPM1 ScerSGD:S000001635 | enables | phosphoglycerate mutase activitygomodel:RXN-15513 |
|
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | has_output | phosphonatoenolpyruvateCHEBI:58702 |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | provides_input_for | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 |
|
phosphoglycerate mutase activitygomodel:RXN-15513 | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | has_input | NAD(1-)CHEBI:57540 |
|
FBP1 ScerSGD:S000004369 | enables | fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | has_input | hydrogenphosphateCHEBI:43474 |
|
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | occurs_in | cytosolGO:0005829 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | has_output | ADP(3-)CHEBI:456216 |
|
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | has_output | 3-phosphonato-D-glycerate(3-)CHEBI:58272 |
|
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | has_input | ADP(3-)CHEBI:456216 |
|
PGK1 ScerSGD:S000000605 | enables | phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN |
|
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | has_input | 3-phosphonato-D-glyceroyl phosphate(4-)CHEBI:57604 |
|
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | provides_input_for | 6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN |
|
glucose-6-phosphate isomerase activitygomodel:PGLUCISOM-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | has_input | NAD(1-)CHEBI:57540 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
CPX-554 ScerSGD:S000218025 | enables | 6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN |
|
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | provides_input_for | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
PGI1 ScerSGD:S000000400 | enables | glucose-6-phosphate isomerase activitygomodel:PGLUCISOM-RXN |
|
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | occurs_in | cytosolGO:0005829 |
|
PYK2 ScerSGD:S000005874 | enables | pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 |
|
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | occurs_in | cytosolGO:0005829 |
|
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | has_output | waterCHEBI:15377 |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | has_output | glycerone phosphate(2-)CHEBI:57642 |
|
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | has_output | pyruvateCHEBI:15361 |
|
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | has_output | waterCHEBI:15377 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | has_output | 3-phosphonato-D-glyceroyl phosphate(4-)CHEBI:57604 |
|
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | occurs_in | cytosolGO:0005829 |
|
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | occurs_in | cytosolGO:0005829 |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | has_input | beta-D-fructofuranose 1,6-bisphosphate(4-)CHEBI:32966 |
|
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | has_input | hydronCHEBI:15378 |
|
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | has_output | ATP(4-)CHEBI:30616 |
|
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | has_input | NAD(1-)CHEBI:57540 |
|
FBA1 ScerSGD:S000001543 | enables | fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN |
|
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | has_output | D-glyceraldehyde 3-phosphate(2-)CHEBI:59776 |
|
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | has_output | ATP(4-)CHEBI:30616 |
|
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | has_output | pyruvateCHEBI:15361 |
|
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | provides_input_for | pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 |
|
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | has_input | hydronCHEBI:15378 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | occurs_in | cytosolGO:0005829 |
|
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | has_output | beta-D-fructofuranose 1,6-bisphosphate(4-)CHEBI:32966 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | has_output | NADH(2-)CHEBI:57945 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | provides_input_for | fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | provides_input_for | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 |
|
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | has_input | waterCHEBI:15377 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | has_output | hydronCHEBI:15378 |
|
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | has_output | phosphonatoenolpyruvateCHEBI:58702 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | occurs_in | cytosolGO:0005829 |
|
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | provides_input_for | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | provides_input_for | phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN |
|
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | has_input | 2-phosphonato-D-glycerate(3-)CHEBI:58289 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | has_input | D-glyceraldehyde 3-phosphate(2-)CHEBI:59776 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | has_output | 3-phosphonato-D-glyceroyl phosphate(4-)CHEBI:57604 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | occurs_in | cytosolGO:0005829 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | has_input | hydrogenphosphateCHEBI:43474 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | has_output | NADH(2-)CHEBI:57945 |
|
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | has_output | hydrogenphosphateCHEBI:43474 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | has_output | 3-phosphonato-D-glyceroyl phosphate(4-)CHEBI:57604 |
|
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | has_input | phosphonatoenolpyruvateCHEBI:58702 |
|
glucose-6-phosphate isomerase activitygomodel:PGLUCISOM-RXN | has_input | D-glucopyranose 6-phosphateCHEBI:4170 |
|
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
glucose-6-phosphate isomerase activitygomodel:PGLUCISOM-RXN | provides_input_for | 6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN |
|
phosphoglycerate mutase activitygomodel:RXN-15513 | provides_input_for | phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | has_output | hydronCHEBI:15378 |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | has_output | D-glyceraldehyde 3-phosphate(2-)CHEBI:59776 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | has_output | NADH(2-)CHEBI:57945 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | has_output | ATP(4-)CHEBI:30616 |
|
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | provides_input_for | phosphoglycerate mutase activitygomodel:RXN-15513 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | has_input | ATP(4-)CHEBI:30616 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | has_output | hydronCHEBI:15378 |
|
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | has_input | 2-phosphonato-D-glycerate(3-)CHEBI:58289 |
|
phosphoglycerate mutase activitygomodel:RXN-15513 | occurs_in | cytosolGO:0005829 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | provides_input_for | fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN |
|
ENO1 ScerSGD:S000003486 | enables | phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN |
|
phosphoglycerate mutase activitygomodel:RXN-15513 | has_output | 2-phosphonato-D-glycerate(3-)CHEBI:58289 |
|
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | has_input | ADP(3-)CHEBI:456216 |
|
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | occurs_in | cytosolGO:0005829 |
|
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | has_input | beta-D-fructofuranose 1,6-bisphosphate(4-)CHEBI:32966 |
|
6-phosphofructokinase activitygomodel:6PFRUCTPHOS-RXN | has_input | beta-D-fructofuranose 6-phosphate(2-)CHEBI:57634 |
|
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | provides_input_for | pyruvate kinase activitygomodel:PEPDEPHOS-RXN |
|
TDH1 ScerSGD:S000003588 | enables | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN |
|
glucose-6-phosphate isomerase activitygomodel:PGLUCISOM-RXN | has_output | beta-D-fructofuranose 6-phosphate(2-)CHEBI:57634 |
|
TDH2 ScerSGD:S000003769 | enables | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 |
|
glucose-6-phosphate isomerase activitygomodel:PGLUCISOM-RXN | occurs_in | cytosolGO:0005829 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | has_input | D-glyceraldehyde 3-phosphate(2-)CHEBI:59776 |
|
TPI1 ScerSGD:S000002457 | enables | triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN |
|
phosphoglycerate mutase activitygomodel:RXN-15513 | has_input | 3-phosphonato-D-glycerate(3-)CHEBI:58272 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | provides_input_for | phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | provides_input_for | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN |
|
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | provides_input_for | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 |
|
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | occurs_in | cytosolGO:0005829 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | has_output | hydronCHEBI:15378 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | has_input | D-glyceraldehyde 3-phosphate(2-)CHEBI:59776 |
|
pyruvate kinase activitygomodel:PEPDEPHOS-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004579 | provides_input_for | phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN |
|
TDH3 ScerSGD:S000003424 | enables | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 |
|
phosphopyruvate hydratase activitygomodel:2PGADEHYDRAT-RXN | provides_input_for | pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 |
|
triose-phosphate isomerase activitygomodel:TRIOSEPISOMERIZATION-RXN | has_input | glycerone phosphate(2-)CHEBI:57642 |
|
phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 | provides_input_for | pyruvate kinase activitygomodel:PEPDEPHOS-RXN |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004606 | occurs_in | cytosolGO:0005829 |
|
phosphoglycerate mutase activitygomodel:RXN-15513 | provides_input_for | phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 |
|
fructose-bisphosphate aldolase activitygomodel:F16ALDOLASE-RXN | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
CDC19 ScerSGD:S000000036 | enables | pyruvate kinase activitygomodel:PEPDEPHOS-RXN |
|
ENO2 ScerSGD:S000001217 | enables | phosphopyruvate hydratase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004626 |
|
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | part_of | glycolytic process through glucose-6-phosphateGO:0061620 |
|
glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activitygomodel:GAPOXNPHOSPHN-RXN | has_input | hydrogenphosphateCHEBI:43474 |
|
fructose 1,6-bisphosphate 1-phosphatase activitygomodel:F16BDEPHOS-RXN | has_output | beta-D-fructofuranose 6-phosphate(2-)CHEBI:57634 |
|
phosphoglycerate kinase activitygomodel:PHOSGLYPHOS-RXN | has_input | ADP(3-)CHEBI:456216 |
|
pyruvate kinase activitygomodel:YeastPathways_GLYCOLYSIS/6a4c244800004636 | has_input | phosphonatoenolpyruvateCHEBI:58702 |
|
CPX-554 ScerSGD:S000218025 | has_part ECO:0000353: physical interaction evidence; source stoichiometry minValue: 4, maxValue: 4 | ATP-dependent 6-phosphofructokinase subunit alphaUniProtKB:P16861 |
|
CPX-554 ScerSGD:S000218025 | has_part ECO:0000353: physical interaction evidence; source stoichiometry minValue: 4, maxValue: 4 | ATP-dependent 6-phosphofructokinase subunit betaUniProtKB:P16862 |
|
GPM1 ScerSGD:S000001635 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | cytoplasmGO:0005737 |
|
GPM1 ScerSGD:S000001635 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:16823961); ECO:0000269 (PubMed:16962558) Topology: Peripheral membrane protein. Orientation: Cytoplasmic side. | mitochondrial outer membraneGO:0005741 |
|
GPM1 ScerSGD:S000001635 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:22984289) | mitochondrial intermembrane spaceGO:0005758 |
|
PGK1 ScerSGD:S000000605 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:11502169) | cytoplasmGO:0005737 |
|
PGK1 ScerSGD:S000000605 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:16823961) | mitochondrionGO:0005739 |
|
PGI1 ScerSGD:S000000400 | located_in Physical protein location from reviewed UniProt. ECO:0000250 (UniProtKB:P78917) | cytosolGO:0005829 |
|
ENO1 ScerSGD:S000003486 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:11502169) | cytoplasmGO:0005737 |
|
TDH1 ScerSGD:S000003588 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:11502169) | cytoplasmGO:0005737 |
|
TDH2 ScerSGD:S000003769 | located_in Physical protein location from reviewed UniProt. ECO:0000250 (UniProtKB:P00360) | cytoplasmGO:0005737 |
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TDH3 ScerSGD:S000003424 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:11502169) | cytoplasmGO:0005737 |
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TDH3 ScerSGD:S000003424 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:16823961) | mitochondrionGO:0005739 |
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ENO2 ScerSGD:S000001217 | located_in Physical protein location from reviewed UniProt. evidence code not specified by source | cytoplasmGO:0005737 |
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ATP-dependent 6-phosphofructokinase subunit alphaUniProtKB:P16861 | located_in Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03184); ECO:0000269 (PubMed:18313953) | cytoplasmGO:0005737 |
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ATP-dependent 6-phosphofructokinase subunit alphaUniProtKB:P16861 | located_in Physical protein location from reviewed UniProt. evidence code not specified by source Topology: Peripheral membrane protein. Orientation: Cytoplasmic side. | mitochondrial outer membraneGO:0005741 |
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ATP-dependent 6-phosphofructokinase subunit betaUniProtKB:P16862 | located_in Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03184); ECO:0000269 (PubMed:18313953) | cytoplasmGO:0005737 |
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ATP-dependent 6-phosphofructokinase subunit betaUniProtKB:P16862 | located_in Physical protein location from reviewed UniProt. evidence code not specified by source Topology: Peripheral membrane protein. Orientation: Cytoplasmic side. | mitochondrial outer membraneGO:0005741 |
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FBP1 ScerSGD:S000004369 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P00636) Binds 3 Mg(2+) ions per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P00636) | magnesium(2+)CHEBI:18420 |
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PGK1 ScerSGD:S000000605 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P00558) | magnesium(2+)CHEBI:18420 |
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PYK2 ScerSGD:S000005874 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 | magnesium(2+)CHEBI:18420 |
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PYK2 ScerSGD:S000005874 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 | potassium(1+)CHEBI:29103 |
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FBA1 ScerSGD:S000001543 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 Binds 2 Zn(2+) ions per subunit. One is catalytic and the other provides a structural contribution. UniProt note evidence: ECO:0000250 | zinc(2+)CHEBI:29105 |
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ENO1 ScerSGD:S000003486 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:8605183) Mg(2+) is required for catalysis and for stabilizing the dimer. UniProt note evidence: ECO:0000269 (PubMed:8605183) | magnesium(2+)CHEBI:18420 |
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CDC19 ScerSGD:S000000036 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:10413488) | magnesium(2+)CHEBI:18420 |
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CDC19 ScerSGD:S000000036 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000305 (PubMed:9519410) | potassium(1+)CHEBI:29103 |
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ENO2 ScerSGD:S000001217 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: not specified Mg(2+) is required for catalysis and for stabilizing the dimer. | magnesium(2+)CHEBI:18420 |
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ATP-dependent 6-phosphofructokinase subunit alphaUniProtKB:P16861 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P0A796); ECO:0000255 (HAMAP-Rule:MF_03184) | magnesium(2+)CHEBI:18420 |
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ATP-dependent 6-phosphofructokinase subunit betaUniProtKB:P16862 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000255 (HAMAP-Rule:MF_03184) | magnesium(2+)CHEBI:18420 |
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References
gomodel:YeastPathways_GLYCOLYSISSGD GO-CAM glycolysis I (from glucose 6-phosphate) model (source version: Pinned Noctua JSON archive; model date 2026-07-30; member ./YeastPathways_GLYCOLYSIS.json)SGD:S000218025Complex Portal CPX-554: 6-phosphofructokinase complex (source version: Inspected API snapshot 2026-10-05; release dates 2014-10-16)UniProtKB:P00950Reviewed UniProtKB P00950 location annotations (source version: UniProt release 2026_03)UniProtKB:P00560Reviewed UniProtKB P00560 location annotations (source version: UniProt release 2026_03)UniProtKB:P12709Reviewed UniProtKB P12709 location annotations (source version: UniProt release 2026_03)UniProtKB:P00924Reviewed UniProtKB P00924 location annotations (source version: UniProt release 2026_03)UniProtKB:P00360Reviewed UniProtKB P00360 location annotations (source version: UniProt release 2026_03)UniProtKB:P00358Reviewed UniProtKB P00358 location annotations (source version: UniProt release 2026_03)UniProtKB:P00359Reviewed UniProtKB P00359 location annotations (source version: UniProt release 2026_03)UniProtKB:P00925Reviewed UniProtKB P00925 location annotations (source version: UniProt release 2026_03)UniProtKB:P16861Reviewed UniProtKB P16861 location annotations (source version: UniProt release 2026_03)UniProtKB:P16862Reviewed UniProtKB P16862 location annotations (source version: UniProt release 2026_03)UniProtKB:P09201UniProtKB P09201 cofactor annotations (source version: 2026_03)UniProtKB:P52489UniProtKB P52489 cofactor annotations (source version: 2026_03)UniProtKB:P14540UniProtKB P14540 cofactor annotations (source version: 2026_03)UniProtKB:P00549UniProtKB P00549 cofactor annotations (source version: 2026_03)
Curation history
- Codex; review-causal-graph; Reviewed every native GO-CAM fact; preserved precise input/output, causal, location, membership and complex-part relations with traceable structured source evidence. Kept distinct generic physical instances and recorded source-scope exclusions in the cohort review ledger. Reviewed exact Complex Portal composition, source evidence grades, and independent physical complex locations.
- Codex; review-complex-composition; Reviewed exact Complex Portal composition, source evidence grades, and independent physical complex locations; reused existing proteins through reviewed UniProt SGD cross-references.
- Codex
- EDIT — Audit causal activity compartments and preserve scoped protein location evidence
Reviewed all 14 activity location assignments and 15 mapped physical proteins against reviewed S288C UniProt release2026_03 location/function/caution batch SHA256 95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d. Added 16 independently supported location edges and quarantined 0 generic cytosol source assertions. Mapped physical protein locations via exact SGD cross-references; retained source ECO grades, molecular form and conditional notes. Physical protein location alone never generates activity location. Explicitly inspected functional assertions support bounded activity projections. Every original activity location and exclusion is recorded in reports/causal_graph_review/gocam-location-review.json. No independent location annotation is treated as an evidence gap, not a negative result. Cytoplasm is not narrowed to cytosol. Microsome fractions are not projected as in-vivo organelles. Semantic validation passed all85 records;4 independent source-role acceptance tests passed.
- EDIT — Audit causal activity compartments and preserve scoped protein location evidence