phospholipid biosynthesis

gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

Phospholipid biosynthesis in Saccharomyces cerevisiae S288C routes CDP-diacylglycerol to phosphatidylserine, phosphatidylethanolamine, phosphatidylcholine, and cardiolipin through CDP-diacylglycerol-serine O-phosphatidyltransferase, phosphatidylserine decarboxylase, phosphatidylethanolamine methyltransferase, phosphatidylglycerophosphate synthase, phosphatidylglycerophosphatase, and cardiolipin synthase activities.

Pathway type
lipid biosynthesis
Organism scope

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Pathway network

50 nodes · 89 asserted directed edges

Arrows show recorded subject → object relationships, not necessarily metabolic flow. Select a node for details or an arrow for evidence. Scroll, zoom or find a node to explore.

Pathway network: phospholipid biosynthesis 50 nodes · 89 asserted directed edges. Every arrow links to its evidence table row; nodes link to their component details. Isolated declared components are retained. gomodel:2.1.1.71-RXN — has_input → CHEBI:59789; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:2.1.1.17-RXN — has_input → CHEBI:16038; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — provides_input_for → gomodel:2.1.1.17-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for gomodel:PGPPHOSPHA-RXN — has_input → CHEBI:15377; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — has_input → CHEBI:11750; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:CARDIOLIPSYN-RXN — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:PGPPHOSPHA-RXN — has_output → CHEBI:64716; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHASERSYN-RXN — has_output → CHEBI:11750; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:RXN3O-349 — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:RXN3O-349 — has_input → CHEBI:17152; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input SGD:S000003402 — enables → gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:PHOSPHASERDECARB-RXN — has_output → CHEBI:16526; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHASERSYN-RXN — has_input → CHEBI:33384; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input SGD:S000005113 — enables → gomodel:PHOSPHASERDECARB-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:2.1.1.71-RXN — has_output → CHEBI:15378; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHASERDECARB-RXN — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of SGD:S000003834 — enables → gomodel:2.1.1.71-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:PGPPHOSPHA-RXN — has_output → CHEBI:43474; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHASERDECARB-RXN — has_input → CHEBI:15378; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:PHOSPHASERSYN-RXN — provides_input_for → gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for gomodel:PHOSPHAGLYPSYN-RXN — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:PHOSPHASERSYN-RXN — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:2.1.1.71-RXN — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:2.1.1.71-RXN — has_output → CHEBI:17152; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — has_output → CHEBI:16526; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:2.1.1.17-RXN — has_input → CHEBI:59789; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:2.1.1.71-RXN — provides_input_for → gomodel:RXN3O-349; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for gomodel:RXN3O-349 — has_output → CHEBI:16110; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PGPPHOSPHA-RXN — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:2.1.1.71-RXN — has_input → CHEBI:15958; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:PHOSPHAGLYPSYN-RXN — has_output → CHEBI:37393; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:RXN3O-349 — has_output → CHEBI:57856; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHASERDECARB-RXN — provides_input_for → gomodel:2.1.1.17-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for gomodel:PGPPHOSPHA-RXN — has_input → CHEBI:37393; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:PHOSPHASERSYN-RXN — has_output → CHEBI:60377; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHAGLYPSYN-RXN — has_input → CHEBI:57597; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input SGD:S000000510 — enables → gomodel:PHOSPHAGLYPSYN-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:PHOSPHAGLYPSYN-RXN — has_output → CHEBI:15378; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output SGD:S000001142 — enables → gomodel:PGPPHOSPHA-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:PHOSPHASERDECARB-RXN — has_input → CHEBI:11750; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:PGPPHOSPHA-RXN — provides_input_for → gomodel:CARDIOLIPSYN-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for SGD:S000002301 — enables → gomodel:CARDIOLIPSYN-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables SGD:S000000828 — enables → gomodel:PHOSPHASERSYN-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:2.1.1.17-RXN — has_output → CHEBI:15378; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:2.1.1.17-RXN — provides_input_for → gomodel:2.1.1.71-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for gomodel:PHOSPHAGLYPSYN-RXN — has_output → CHEBI:60377; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output SGD:S000003389 — enables → gomodel:2.1.1.17-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — has_output → CHEBI:16038; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — has_input → CHEBI:15378; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:PHOSPHAGLYPSYN-RXN — has_input → CHEBI:17962; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:PHOSPHASERDECARB-RXN — has_output → CHEBI:16038; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:RXN3O-349 — has_input → CHEBI:59789; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:2.1.1.17-RXN — has_output → CHEBI:15958; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHASERSYN-RXN — has_input → CHEBI:17962; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has input gomodel:2.1.1.71-RXN — has_output → CHEBI:57856; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output SGD:S000003834 — enables → gomodel:RXN3O-349; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1enables gomodel:2.1.1.17-RXN — part_of → GO:0008654; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1part of gomodel:PHOSPHASERSYN-RXN — provides_input_for → gomodel:PHOSPHASERDECARB-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for gomodel:PHOSPHAGLYPSYN-RXN — provides_input_for → gomodel:PGPPHOSPHA-RXN; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1provides input for gomodel:2.1.1.17-RXN — has_output → CHEBI:57856; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output gomodel:PHOSPHASERSYN-RXN — has_output → CHEBI:15378; Evidence: gomodel:YeastPathways_PHOSLIPSYN2-PWY-1has output SGD:S000003402 — located_in → GO:0000139; Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:7890739) Topology: Peripheral membrane protein. Orientation: Cytoplasmic side.; Evidence: UniProtKB:P53037, UniProtKB:P53037located in SGD:S000003402 — located_in → GO:0010008; Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:20016005) Topology: Peripheral membrane protein. Orientation: Cytoplasmic side.; Evidence: UniProtKB:P53037, UniProtKB:P53037located in SGD:S000005113 — located_in → GO:0005743; Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03208); ECO:0000269 (PubMed:14576278); ECO:0000269 (PubMed:22984266); ECO:0000269 (PubMed:23124206); ECO:0000269 (PubMed:29290583); ECO:0000269 (PubMed:3005242); ECO:0000269 (PubMed:33718843); ECO:0000305 (PubMed:34818062); molecular form: Phosphatidylserine decarboxylase 1 beta chain. Topology: Single-pass membrane protein. Orientation: Intermembrane side.; Evidence: UniProtKB:P39006, UniProtKB:P39006, UniProtKB:P39006located in SGD:S000005113 — located_in → GO:0005811; Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:34818062) Source qualification: Localizes to sites of lipid droplet formation on the endoplasmic reticulum membrane; Evidence: UniProtKB:P39006, UniProtKB:P39006located in SGD:S000005113 — located_in → GO:0005789; Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:29290583); ECO:0000269 (PubMed:34818062) Source qualification: Localizes to sites of lipid droplet formation on the endoplasmic reticulum membrane; Evidence: UniProtKB:P39006, UniProtKB:P39006located in SGD:S000003834 — located_in → GO:0005789; Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03216); ECO:0000269 (PubMed:14562095) Topology: Multi-pass membrane protein.; Evidence: UniProtKB:P05375, UniProtKB:P05375located in SGD:S000003834 — located_in → GO:0031966; Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03216); ECO:0000269 (PubMed:14576278) Topology: Multi-pass membrane protein.; Evidence: UniProtKB:P05375, UniProtKB:P05375located in SGD:S000000510 — located_in → GO:0005739; Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:9545322); ECO:0000269 (PubMed:9799363); Evidence: UniProtKB:P25578, UniProtKB:P25578located in SGD:S000001142 — located_in → GO:0005743; Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:16823961); ECO:0000269 (PubMed:20485265) Topology: Peripheral membrane protein. Orientation: Matrix side.; Evidence: UniProtKB:P38812, UniProtKB:P38812located in SGD:S000002301 — located_in → GO:0005743; Physical protein location from reviewed UniProt. ECO:0000305 (PubMed:9442089) Topology: Multi-pass membrane protein.; Evidence: UniProtKB:Q07560, UniProtKB:Q07560located in SGD:S000000828 — located_in → GO:0005789; Physical protein location from reviewed UniProt. evidence code not specified by source Topology: Multi-pass membrane protein.; Evidence: UniProtKB:P08456, UniProtKB:P08456located in SGD:S000000828 — located_in → GO:0005741; Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:3005242) Topology: Multi-pass membrane protein.; Evidence: UniProtKB:P08456, UniProtKB:P08456located in SGD:S000003389 — located_in → GO:0005789; Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03217); ECO:0000269 (PubMed:14562095) Topology: Multi-pass membrane protein.; Evidence: UniProtKB:P05374, UniProtKB:P05374located in gomodel:PHOSPHASERDECARB-RXN — occurs_in → GO:0005739; Activity compartment supported by an inspected functional annotation. ECO:0000255 (HAMAP-Rule:MF_03208); ECO:0000269 (PubMed:11294902); ECO:0000269 (PubMed:17976194); ECO:0000269 (PubMed:23045528); ECO:0000269 (PubMed:23124206); ECO:0000269 (PubMed:25829489); ECO:0000269 (PubMed:29290583); ECO:0000269 (PubMed:30926815); ECO:0000269 (PubMed:34818062); ECO:0000269 (PubMed:8227017); ECO:0000269 (PubMed:8407984); ECO:0000269 (PubMed:8530379). Alternative isoenzymes may function elsewhere.; Evidence: UniProtKB:P39006occurs in gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — occurs_in → GO:0000139; Activity compartment supported by an inspected functional annotation. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:11294902); ECO:0000269 (PubMed:20016005); ECO:0000269 (PubMed:24366873); ECO:0000269 (PubMed:7890739); ECO:0000269 (PubMed:7890740). Alternative isoenzymes may function elsewhere.; Evidence: UniProtKB:P53037occurs in gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 — occurs_in → GO:0010008; Activity compartment supported by an inspected functional annotation. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:11294902); ECO:0000269 (PubMed:20016005); ECO:0000269 (PubMed:24366873); ECO:0000269 (PubMed:7890739); ECO:0000269 (PubMed:7890740). Alternative isoenzymes may function elsewhere.; Evidence: UniProtKB:P53037occurs in gomodel:CARDIOLIPSYN-RXN — has_input → CHEBI:58332; Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.; Evidence: UniProtKB:Q07560has input gomodel:CARDIOLIPSYN-RXN — has_input → CHEBI:64716; Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.; Evidence: UniProtKB:Q07560has input gomodel:CARDIOLIPSYN-RXN — has_output → CHEBI:62237; Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.; Evidence: UniProtKB:Q07560has output gomodel:CARDIOLIPSYN-RXN — has_output → CHEBI:60377; Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.; Evidence: UniProtKB:Q07560has output gomodel:CARDIOLIPSYN-RXN — has_output → CHEBI:15378; Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.; Evidence: UniProtKB:Q07560has output SGD:S000003402 — has_cofactor → CHEBI:45360; UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The cofactor note explicitly describes a covalently bound pyruvoyl group; use the exact group class rather than free pyruvate. UniProt evidence: ECO:0000250 (UniProtKB:P0A8K1); ECO:0000255 (HAMAP-Rule:MF_03209) Binds 1 pyruvoyl group covalently per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P0A8K1); ECO:0000255 (HAMAP-Rule:MF_03209); Evidence: CHEBI:45360, UniProtKB:P53037, UniProtKB:P53037has cofactor SGD:S000003402 — has_cofactor → CHEBI:29108; UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The cofactor note explicitly describes a covalently bound pyruvoyl group; use the exact group class rather than free pyruvate. UniProt evidence: ECO:0000255 (PROSITE-ProRule:PRU00041); Evidence: UniProtKB:P53037, UniProtKB:P53037has cofactor SGD:S000005113 — has_cofactor → CHEBI:45360; UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The cofactor note explicitly describes a covalently bound pyruvoyl group; use the exact group class rather than free pyruvate. UniProt evidence: ECO:0000255 (HAMAP-Rule:MF_03208) Binds 1 pyruvoyl group covalently per subunit. UniProt note evidence: ECO:0000255 (HAMAP-Rule:MF_03208); Evidence: CHEBI:45360, UniProtKB:P39006, UniProtKB:P39006has cofactor SGD:S000002301 — has_cofactor → CHEBI:18420; UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The caution corrects the historical species attribution of a sequence; the current reviewed yeast entry and magnesium annotation remain applicable. UniProt evidence: ECO:0000269 (PubMed:2171667); Evidence: UniProtKB:Q07560, UniProtKB:Q07560has cofactor SGD:S000000828 — has_cofactor → CHEBI:29035; UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:6088519); ECO:0000269 (PubMed:6274497) Divalent metal cations; Mn(2+) or Mg(2+). UniProt note evidence: ECO:0000269 (PubMed:6088519); Evidence: UniProtKB:P08456, UniProtKB:P08456has cofactor SGD:S000000828 — has_cofactor → CHEBI:18420; UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:6088519) Divalent metal cations; Mn(2+) or Mg(2+). UniProt note evidence: ECO:0000269 (PubMed:6088519); Evidence: UniProtKB:P08456, UniProtKB:P08456has cofactor S-adenosyl-L-methionine zwitterion; CHEBI:59789; Declared type: small_molecule small molecule S-adenosyl-L-methionine zwitterion phosphatidylethanolamine; CHEBI:16038; Declared type: lipid lipid phosphatidylethanolamine water; CHEBI:15377; Declared type: small_molecule small molecule water 3-sn-phosphatidyl-L-serine; CHEBI:11750; Declared type: lipid lipid 3-sn-phosphatidyl-L-serine phospholipid biosynthetic process; GO:0008654; Declared type: biological_process biological process phospholipid biosynthetic process 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)(1-); CHEBI:64716; Declared type: small_molecule small molecule 1,2-diacyl-sn- glycero-3-phospho-(1'-sn- glycerol)(1-) cardiolipin(2-); CHEBI:62237; Declared type: small_molecule small molecule cardiolipin(2-) cytosol; GO:0005829; Declared type: cellular_component cellular component cytosol phosphatidyl-N,N-dimethylethanolamine; CHEBI:17152; Declared type: lipid lipid phosphatidyl-N,N- dimethylethanolamine PSD2 Scer; SGD:S000003402; Declared type: protein protein PSD2 Scer carbon dioxide; CHEBI:16526; Declared type: small_molecule small molecule carbon dioxide L-serine zwitterion; CHEBI:33384; Declared type: small_molecule small molecule L-serine zwitterion PSD1 Scer; SGD:S000005113; Declared type: protein protein PSD1 Scer hydron; CHEBI:15378; Declared type: small_molecule small molecule hydron OPI3 Scer; SGD:S000003834; Declared type: protein protein OPI3 Scer hydrogenphosphate; CHEBI:43474; Declared type: small_molecule small molecule hydrogenphosphate 1,2-diacyl-sn-glycero-3-phosphocholine(1+); CHEBI:16110; Declared type: small_molecule small molecule 1,2-diacyl-sn- glycero-3-phosphocholine(1+) phosphatidyl-N-methylethanolamine; CHEBI:15958; Declared type: lipid lipid phosphatidyl-N- methylethanolamine 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate; CHEBI:37393; Declared type: lipid lipid 1-(3-sn-phosphatidyl)-sn- glycerol 3-phosphate S-adenosyl-L-homocysteine zwitterion; CHEBI:57856; Declared type: small_molecule small molecule S-adenosyl-L-homocysteine zwitterion cytidine 5'-monophosphate(2-); CHEBI:60377; Declared type: small_molecule small molecule cytidine 5'-monophosphate(2-) sn-glycerol 3-phosphate(2-); CHEBI:57597; Declared type: small_molecule small molecule sn-glycerol 3-phosphate(2-) PGS1 Scer; SGD:S000000510; Declared type: protein protein PGS1 Scer GEP4 Scer; SGD:S000001142; Declared type: protein protein GEP4 Scer CRD1 Scer; SGD:S000002301; Declared type: protein protein CRD1 Scer CHO1 Scer; SGD:S000000828; Declared type: protein protein CHO1 Scer CHO2 Scer; SGD:S000003389; Declared type: protein protein CHO2 Scer CDP-diacylglycerol; CHEBI:17962; Declared type: lipid lipid CDP-diacylglycerol Golgi membrane; GO:0000139; Declared type: cellular_component cellular component Golgi membrane endosome membrane; GO:0010008; Declared type: cellular_component cellular component endosome membrane mitochondrial inner membrane; GO:0005743; Declared type: cellular_component cellular component mitochondrial inner membrane lipid droplet; GO:0005811; Declared type: cellular_component cellular component lipid droplet endoplasmic reticulum membrane; GO:0005789; Declared type: cellular_component cellular component endoplasmic reticulum membrane mitochondrial membrane; GO:0031966; Declared type: cellular_component cellular component mitochondrial membrane mitochondrion; GO:0005739; Declared type: cellular_component cellular component mitochondrion mitochondrial outer membrane; GO:0005741; Declared type: cellular_component cellular component mitochondrial outer membrane CDP-diacylglycerol(2-); CHEBI:58332; Declared type: lipid lipid CDP-diacylglycerol(2-) pyruvoyl group; CHEBI:45360; Declared type: cofactor cofactor pyruvoyl group calcium(2+); CHEBI:29108; Declared type: cofactor cofactor calcium(2+) magnesium(2+); CHEBI:18420; Declared type: cofactor cofactor magnesium(2+) manganese(2+); CHEBI:29035; Declared type: cofactor cofactor manganese(2+) phosphatidylethanolamine N-methyltransferase activity; gomodel:2.1.1.17-RXN; Declared type: molecular_activity molecular activity phosphatidylethanolamine N-methyltransferase activity phosphatidyl-N-methylethanolamine N-methyltransferase activity; gomodel:2.1.1.71-RXN; Declared type: molecular_activity molecular activity phosphatidyl-N- methylethanolamine N-methyltransferase activity cardiolipin synthase (CMP-forming) activity; gomodel:CARDIOLIPSYN-RXN; Declared type: molecular_activity molecular activity cardiolipin synthase (CMP- forming) activity phosphatidylglycerophosphatase activity; gomodel:PGPPHOSPHA-RXN; Declared type: molecular_activity molecular activity phosphatidylglycerophosphata se activity CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; gomodel:PHOSPHAGLYPSYN-RXN; Declared type: molecular_activity molecular activity CDP-diacylglycerol- glycerol-3-phosphate 3-phosphatidyltransferase activity phosphatidylserine decarboxylase activity; gomodel:PHOSPHASERDECARB-RXN; Declared type: molecular_activity molecular activity phosphatidylserine decarboxylase activity CDP-diacylglycerol-serine O-phosphatidyltransferase activity; gomodel:PHOSPHASERSYN-RXN; Declared type: molecular_activity molecular activity CDP-diacylglycerol-serine O-phosphatidyltransferase activity phosphatidyl-N-methylethanolamine N-methyltransferase activity; gomodel:RXN3O-349; Declared type: molecular_activity molecular activity phosphatidyl-N- methylethanolamine N-methyltransferase activity phosphatidylserine decarboxylase activity; gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485; Declared type: molecular_activity molecular activity phosphatidylserine decarboxylase activity

Components and activities

Declared biological components and source reaction directions
NodeKind or roleSource direction
Saccharomyces cerevisiae S288C
NCBITaxon:559292
taxon
S-adenosyl-L-methionine zwitterion
CHEBI:59789
small molecule
phosphatidylethanolamine
CHEBI:16038
lipid
water
CHEBI:15377
small molecule
3-sn-phosphatidyl-L-serine
CHEBI:11750
lipid
phospholipid biosynthetic process
GO:0008654
biological process
1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)(1-)
CHEBI:64716
small molecule
cardiolipin(2-)
CHEBI:62237
small molecule
cytosol
GO:0005829
cellular component
phosphatidyl-N,N-dimethylethanolamine
CHEBI:17152
lipid
PSD2 Scer
SGD:S000003402
protein
carbon dioxide
CHEBI:16526
small molecule
L-serine zwitterion
CHEBI:33384
small molecule
PSD1 Scer
SGD:S000005113
protein
hydron
CHEBI:15378
small molecule
OPI3 Scer
SGD:S000003834
protein
hydrogenphosphate
CHEBI:43474
small molecule
1,2-diacyl-sn-glycero-3-phosphocholine(1+)
CHEBI:16110
small molecule
phosphatidyl-N-methylethanolamine
CHEBI:15958
lipid
1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate
CHEBI:37393
lipid
S-adenosyl-L-homocysteine zwitterion
CHEBI:57856
small molecule
cytidine 5'-monophosphate(2-)
CHEBI:60377
small molecule
sn-glycerol 3-phosphate(2-)
CHEBI:57597
small molecule
PGS1 Scer
SGD:S000000510
protein
GEP4 Scer
SGD:S000001142
protein
CRD1 Scer
SGD:S000002301
protein
CHO1 Scer
SGD:S000000828
protein
CHO2 Scer
SGD:S000003389
protein
CDP-diacylglycerol
CHEBI:17962
lipid
Golgi membrane
GO:0000139
cellular component
endosome membrane
GO:0010008
cellular component
mitochondrial inner membrane
GO:0005743
cellular component
lipid droplet
GO:0005811
cellular component
endoplasmic reticulum membrane
GO:0005789
cellular component
mitochondrial membrane
GO:0031966
cellular component
mitochondrion
GO:0005739
cellular component
mitochondrial outer membrane
GO:0005741
cellular component
CDP-diacylglycerol(2-)
CHEBI:58332
lipid
pyruvoyl group
CHEBI:45360
cofactor
calcium(2+)
CHEBI:29108
cofactor
magnesium(2+)
CHEBI:18420
cofactor
manganese(2+)
CHEBI:29035
cofactor
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
molecular activity
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
molecular activity
cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
molecular activity
phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
molecular activity
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
molecular activity
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
molecular activity
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
molecular activity
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
molecular activity
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
molecular activity

Mechanistic edges

Mechanistic edges and their cited evidence
SubjectPredicate and descriptionObjectEvidence
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
has_input

S-adenosyl-L-methionine zwitterion
CHEBI:59789
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN RO:0002233 gomodel:CHEBI_59789_2.1.1.71-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/0; endpoint types: /individuals/101/type; /individuals/24/type
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
has_input

phosphatidylethanolamine
CHEBI:16038
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN RO:0002233 gomodel:CHEBI_16038_PHOSPHASERDECARB-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/1; endpoint types: /individuals/100/type; /individuals/9/type
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
provides_input_for

phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 RO:0002413 gomodel:2.1.1.17-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/2; endpoint types: /individuals/111/type; /individuals/100/type
phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
has_input

water
CHEBI:15377
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PGPPHOSPHA-RXN RO:0002233 gomodel:CHEBI_15377_PGPPHOSPHA-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/3; endpoint types: /individuals/30/type; /individuals/2/type
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
has_input

3-sn-phosphatidyl-L-serine
CHEBI:11750
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 RO:0002233 gomodel:CHEBI_11750_PHOSPHASERSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/4; endpoint types: /individuals/111/type; /individuals/1/type
cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:CARDIOLIPSYN-RXN BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/5; endpoint types: /individuals/0/type; /individuals/102/type
phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
has_output

1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)(1-)
CHEBI:64716
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PGPPHOSPHA-RXN RO:0002234 gomodel:CHEBI_64716_PGPPHOSPHA-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/6; endpoint types: /individuals/30/type; /individuals/29/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
has_output

3-sn-phosphatidyl-L-serine
CHEBI:11750
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002234 gomodel:CHEBI_11750_PHOSPHASERSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/8; endpoint types: /individuals/33/type; /individuals/1/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:RXN3O-349 BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/9; endpoint types: /individuals/34/type; /individuals/102/type
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/10; endpoint types: /individuals/111/type; /individuals/102/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
has_input

phosphatidyl-N,N-dimethylethanolamine
CHEBI:17152
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:RXN3O-349 RO:0002233 gomodel:CHEBI_17152_2.1.1.71-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/12; endpoint types: /individuals/34/type; /individuals/12/type
PSD2 Scer
SGD:S000003402
enables

phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 RO:0002333 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007488.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/13; endpoint types: /individuals/111/type; /individuals/114/type
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
has_output

carbon dioxide
CHEBI:16526
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERDECARB-RXN RO:0002234 gomodel:CHEBI_16526_PHOSPHASERDECARB-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/14; endpoint types: /individuals/32/type; /individuals/11/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
has_input

L-serine zwitterion
CHEBI:33384
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002233 gomodel:CHEBI_33384_PHOSPHASERSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/15; endpoint types: /individuals/33/type; /individuals/16/type
PSD1 Scer
SGD:S000005113
enables

phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERDECARB-RXN RO:0002333 gomodel:YNL169C-MONOMER_PHOSPHASERDECARB-RXN_controller.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/16; endpoint types: /individuals/32/type; /individuals/41/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
has_output

hydron
CHEBI:15378
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN RO:0002234 gomodel:CHEBI_15378_2.1.1.71-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/17; endpoint types: /individuals/101/type; /individuals/4/type
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERDECARB-RXN BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/18; endpoint types: /individuals/32/type; /individuals/102/type
OPI3 Scer
SGD:S000003834
enables

phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN RO:0002333 gomodel:YJR073C-MONOMER_2.1.1.71-RXN_controller.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/19; endpoint types: /individuals/101/type; /individuals/39/type
phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
has_output

hydrogenphosphate
CHEBI:43474
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PGPPHOSPHA-RXN RO:0002234 gomodel:CHEBI_43474_PGPPHOSPHA-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/20; endpoint types: /individuals/30/type; /individuals/18/type
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
has_input

hydron
CHEBI:15378
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERDECARB-RXN RO:0002233 gomodel:CHEBI_15378_PHOSPHASERDECARB-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/21; endpoint types: /individuals/32/type; /individuals/6/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
provides_input_for

phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002413 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/22; endpoint types: /individuals/33/type; /individuals/111/type
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/23; endpoint types: /individuals/31/type; /individuals/102/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/25; endpoint types: /individuals/33/type; /individuals/102/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/26; endpoint types: /individuals/101/type; /individuals/102/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
has_output

phosphatidyl-N,N-dimethylethanolamine
CHEBI:17152
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN RO:0002234 gomodel:CHEBI_17152_2.1.1.71-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/27; endpoint types: /individuals/101/type; /individuals/12/type
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
has_output

carbon dioxide
CHEBI:16526
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 RO:0002234 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007487.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/28; endpoint types: /individuals/111/type; /individuals/113/type
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
has_input

S-adenosyl-L-methionine zwitterion
CHEBI:59789
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN RO:0002233 gomodel:CHEBI_59789_2.1.1.17-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/29; endpoint types: /individuals/100/type; /individuals/23/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
provides_input_for

phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN RO:0002413 gomodel:RXN3O-349.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/30; endpoint types: /individuals/101/type; /individuals/34/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
has_output

1,2-diacyl-sn-glycero-3-phosphocholine(1+)
CHEBI:16110
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:RXN3O-349 RO:0002234 gomodel:CHEBI_16110_RXN3O-349.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/32; endpoint types: /individuals/34/type; /individuals/10/type
phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PGPPHOSPHA-RXN BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/33; endpoint types: /individuals/30/type; /individuals/102/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
has_input

phosphatidyl-N-methylethanolamine
CHEBI:15958
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN RO:0002233 gomodel:CHEBI_15958_2.1.1.17-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/34; endpoint types: /individuals/101/type; /individuals/8/type
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
has_output

1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate
CHEBI:37393
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN RO:0002234 gomodel:CHEBI_37393_PHOSPHAGLYPSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/35; endpoint types: /individuals/31/type; /individuals/17/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
has_output

S-adenosyl-L-homocysteine zwitterion
CHEBI:57856
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:RXN3O-349 RO:0002234 gomodel:CHEBI_57856_RXN3O-349.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/36; endpoint types: /individuals/34/type; /individuals/22/type
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
provides_input_for

phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERDECARB-RXN RO:0002413 gomodel:2.1.1.17-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/37; endpoint types: /individuals/32/type; /individuals/100/type
phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
has_input

1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate
CHEBI:37393
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PGPPHOSPHA-RXN RO:0002233 gomodel:CHEBI_37393_PHOSPHAGLYPSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/39; endpoint types: /individuals/30/type; /individuals/17/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
has_output

cytidine 5'-monophosphate(2-)
CHEBI:60377
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002234 gomodel:CHEBI_60377_PHOSPHASERSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/40; endpoint types: /individuals/33/type; /individuals/27/type
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
has_input

sn-glycerol 3-phosphate(2-)
CHEBI:57597
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN RO:0002233 gomodel:CHEBI_57597_PHOSPHAGLYPSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/41; endpoint types: /individuals/31/type; /individuals/19/type
PGS1 Scer
SGD:S000000510
enables

CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN RO:0002333 gomodel:YCL004W-MONOMER_PHOSPHAGLYPSYN-RXN_controller.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/43; endpoint types: /individuals/31/type; /individuals/35/type
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
has_output

hydron
CHEBI:15378
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN RO:0002234 gomodel:CHEBI_15378_PHOSPHAGLYPSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/44; endpoint types: /individuals/31/type; /individuals/5/type
GEP4 Scer
SGD:S000001142
enables

phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PGPPHOSPHA-RXN RO:0002333 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007476.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/45; endpoint types: /individuals/30/type; /individuals/103/type
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
has_input

3-sn-phosphatidyl-L-serine
CHEBI:11750
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERDECARB-RXN RO:0002233 gomodel:CHEBI_11750_PHOSPHASERSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/46; endpoint types: /individuals/32/type; /individuals/1/type
phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
provides_input_for

cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PGPPHOSPHA-RXN RO:0002413 gomodel:CARDIOLIPSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/47; endpoint types: /individuals/30/type; /individuals/0/type
CRD1 Scer
SGD:S000002301
enables

cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:CARDIOLIPSYN-RXN RO:0002333 gomodel:YDL142C-MONOMER_CARDIOLIPSYN-RXN_controller.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/48; endpoint types: /individuals/0/type; /individuals/36/type
CHO1 Scer
SGD:S000000828
enables

CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002333 gomodel:YER026C-MONOMER_PHOSPHASERSYN-RXN_controller.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/49; endpoint types: /individuals/33/type; /individuals/37/type
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
has_output

hydron
CHEBI:15378
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN RO:0002234 gomodel:CHEBI_15378_2.1.1.17-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/50; endpoint types: /individuals/100/type; /individuals/3/type
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
provides_input_for

phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN RO:0002413 gomodel:2.1.1.71-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/51; endpoint types: /individuals/100/type; /individuals/101/type
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
has_output

cytidine 5'-monophosphate(2-)
CHEBI:60377
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN RO:0002234 gomodel:CHEBI_60377_PHOSPHAGLYPSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/52; endpoint types: /individuals/31/type; /individuals/26/type
CHO2 Scer
SGD:S000003389
enables

phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN RO:0002333 gomodel:YGR157W-MONOMER_2.1.1.17-RXN_controller.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/53; endpoint types: /individuals/100/type; /individuals/38/type
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
has_output

phosphatidylethanolamine
CHEBI:16038
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 RO:0002234 gomodel:CHEBI_16038_PHOSPHASERDECARB-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/54; endpoint types: /individuals/111/type; /individuals/9/type
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
has_input

hydron
CHEBI:15378
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485 RO:0002233 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007486.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/55; endpoint types: /individuals/111/type; /individuals/112/type
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
has_input

CDP-diacylglycerol
CHEBI:17962
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN RO:0002233 gomodel:CHEBI_17962_PHOSPHAGLYPSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/56; endpoint types: /individuals/31/type; /individuals/14/type
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
has_output

phosphatidylethanolamine
CHEBI:16038
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERDECARB-RXN RO:0002234 gomodel:CHEBI_16038_PHOSPHASERDECARB-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/57; endpoint types: /individuals/32/type; /individuals/9/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
has_input

S-adenosyl-L-methionine zwitterion
CHEBI:59789
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:RXN3O-349 RO:0002233 gomodel:CHEBI_59789_RXN3O-349.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/58; endpoint types: /individuals/34/type; /individuals/25/type
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
has_output

phosphatidyl-N-methylethanolamine
CHEBI:15958
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN RO:0002234 gomodel:CHEBI_15958_2.1.1.17-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/59; endpoint types: /individuals/100/type; /individuals/8/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
has_input

CDP-diacylglycerol
CHEBI:17962
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002233 gomodel:CHEBI_17962_PHOSPHASERSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/62; endpoint types: /individuals/33/type; /individuals/15/type
phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:2.1.1.71-RXN
has_output

S-adenosyl-L-homocysteine zwitterion
CHEBI:57856
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.71-RXN RO:0002234 gomodel:CHEBI_57856_2.1.1.71-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/64; endpoint types: /individuals/101/type; /individuals/21/type
OPI3 Scer
SGD:S000003834
enables

phosphatidyl-N-methylethanolamine N-methyltransferase activity
gomodel:RXN3O-349
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:RXN3O-349 RO:0002333 gomodel:YJR073C-MONOMER_RXN3O-349_controller.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/65; endpoint types: /individuals/34/type; /individuals/40/type
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
part_of

phospholipid biosynthetic process
GO:0008654
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN BFO:0000050 gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/YeastPathways_PHOSLIPSYN2-PWY-1.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/66; endpoint types: /individuals/100/type; /individuals/102/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
provides_input_for

phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002413 gomodel:PHOSPHASERDECARB-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/69; endpoint types: /individuals/33/type; /individuals/32/type
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
gomodel:PHOSPHAGLYPSYN-RXN
provides_input_for

phosphatidylglycerophosphatase activity
gomodel:PGPPHOSPHA-RXN
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHAGLYPSYN-RXN RO:0002413 gomodel:PGPPHOSPHA-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/71; endpoint types: /individuals/31/type; /individuals/30/type
phosphatidylethanolamine N-methyltransferase activity
gomodel:2.1.1.17-RXN
has_output

S-adenosyl-L-homocysteine zwitterion
CHEBI:57856
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:2.1.1.17-RXN RO:0002234 gomodel:CHEBI_57856_2.1.1.17-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/72; endpoint types: /individuals/100/type; /individuals/20/type
CDP-diacylglycerol-serine O-phosphatidyltransferase activity
gomodel:PHOSPHASERSYN-RXN
has_output

hydron
CHEBI:15378
  • gomodel:YeastPathways_PHOSLIPSYN2-PWY-1

    Source assertion: The model asserts gomodel:PHOSPHASERSYN-RXN RO:0002234 gomodel:CHEBI_15378_PHOSPHASERSYN-RXN.

    Source location./YeastPathways_PHOSLIPSYN2-PWY-1.json#/facts/73; endpoint types: /individuals/33/type; /individuals/7/type
PSD2 Scer
SGD:S000003402
located_in

Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:7890739) Topology: Peripheral membrane protein. Orientation: Cytoplasmic side.

Golgi membrane
GO:0000139
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 annotates location Golgi apparatus membrane (SL-0134).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2090/comments/1/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 has the exact SGD cross-reference SGD:S000003402.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2090/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
PSD2 Scer
SGD:S000003402
located_in

Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:20016005) Topology: Peripheral membrane protein. Orientation: Cytoplasmic side.

endosome membrane
GO:0010008
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 annotates location Endosome membrane (SL-0100).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2090/comments/1/subcellularLocations/1; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 has the exact SGD cross-reference SGD:S000003402.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2090/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
PSD1 Scer
SGD:S000005113
located_in

Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03208); ECO:0000269 (PubMed:14576278); ECO:0000269 (PubMed:22984266); ECO:0000269 (PubMed:23124206); ECO:0000269 (PubMed:29290583); ECO:0000269 (PubMed:3005242); ECO:0000269 (PubMed:33718843); ECO:0000305 (PubMed:34818062); molecular form: Phosphatidylserine decarboxylase 1 beta chain. Topology: Single-pass membrane protein. Orientation: Intermembrane side.

mitochondrial inner membrane
GO:0005743
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 annotates location Mitochondrion inner membrane (SL-0168); molecular form: Phosphatidylserine decarboxylase 1 beta chain.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/comments/1/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 has the exact SGD cross-reference SGD:S000005113.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 annotates location Mitochondrion inner membrane (SL-0168); molecular form: Phosphatidylserine decarboxylase 1 alpha chain.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/comments/2/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
PSD1 Scer
SGD:S000005113
located_in

Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:34818062) Source qualification: Localizes to sites of lipid droplet formation on the endoplasmic reticulum membrane

lipid droplet
GO:0005811
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 annotates location Lipid droplet (SL-0154).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/comments/3/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 has the exact SGD cross-reference SGD:S000005113.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
PSD1 Scer
SGD:S000005113
located_in

Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:29290583); ECO:0000269 (PubMed:34818062) Source qualification: Localizes to sites of lipid droplet formation on the endoplasmic reticulum membrane

endoplasmic reticulum membrane
GO:0005789
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 annotates location Endoplasmic reticulum membrane (SL-0097).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/comments/3/subcellularLocations/1; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 has the exact SGD cross-reference SGD:S000005113.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
OPI3 Scer
SGD:S000003834
located_in

Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03216); ECO:0000269 (PubMed:14562095) Topology: Multi-pass membrane protein.

endoplasmic reticulum membrane
GO:0005789
  • UniProtKB:P05375

    Source assertion: UniProtKB:P05375 annotates location Endoplasmic reticulum membrane (SL-0097).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/106/comments/1/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P05375

    Source assertion: UniProtKB:P05375 has the exact SGD cross-reference SGD:S000003834.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/106/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
OPI3 Scer
SGD:S000003834
located_in

Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03216); ECO:0000269 (PubMed:14576278) Topology: Multi-pass membrane protein.

mitochondrial membrane
GO:0031966
  • UniProtKB:P05375

    Source assertion: UniProtKB:P05375 annotates location Mitochondrion membrane (SL-0171).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/106/comments/1/subcellularLocations/1; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P05375

    Source assertion: UniProtKB:P05375 has the exact SGD cross-reference SGD:S000003834.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/106/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
PGS1 Scer
SGD:S000000510
located_in

Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:9545322); ECO:0000269 (PubMed:9799363)

mitochondrion
GO:0005739
  • UniProtKB:P25578

    Source assertion: UniProtKB:P25578 annotates location Mitochondrion (SL-0173).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/3372/comments/1/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P25578

    Source assertion: UniProtKB:P25578 has the exact SGD cross-reference SGD:S000000510.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/3372/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
GEP4 Scer
SGD:S000001142
located_in

Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:16823961); ECO:0000269 (PubMed:20485265) Topology: Peripheral membrane protein. Orientation: Matrix side.

mitochondrial inner membrane
GO:0005743
  • UniProtKB:P38812

    Source assertion: UniProtKB:P38812 annotates location Mitochondrion inner membrane (SL-0168).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/3637/comments/1/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P38812

    Source assertion: UniProtKB:P38812 has the exact SGD cross-reference SGD:S000001142.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/3637/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
CRD1 Scer
SGD:S000002301
located_in

Physical protein location from reviewed UniProt. ECO:0000305 (PubMed:9442089) Topology: Multi-pass membrane protein.

mitochondrial inner membrane
GO:0005743
  • UniProtKB:Q07560

    Source assertion: UniProtKB:Q07560 annotates location Mitochondrion inner membrane (SL-0168).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2821/comments/1/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:Q07560

    Source assertion: UniProtKB:Q07560 has the exact SGD cross-reference SGD:S000002301.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2821/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
CHO1 Scer
SGD:S000000828
located_in

Physical protein location from reviewed UniProt. evidence code not specified by source Topology: Multi-pass membrane protein.

endoplasmic reticulum membrane
GO:0005789
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 annotates location Endoplasmic reticulum membrane (SL-0097).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/205/comments/1/subcellularLocations/1; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 has the exact SGD cross-reference SGD:S000000828.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/205/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
CHO1 Scer
SGD:S000000828
located_in

Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:3005242) Topology: Multi-pass membrane protein.

mitochondrial outer membrane
GO:0005741
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 annotates location Mitochondrion outer membrane (SL-0172).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/205/comments/1/subcellularLocations/2; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 has the exact SGD cross-reference SGD:S000000828.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/205/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
CHO2 Scer
SGD:S000003389
located_in

Physical protein location from reviewed UniProt. ECO:0000255 (HAMAP-Rule:MF_03217); ECO:0000269 (PubMed:14562095) Topology: Multi-pass membrane protein.

endoplasmic reticulum membrane
GO:0005789
  • UniProtKB:P05374

    Source assertion: UniProtKB:P05374 annotates location Endoplasmic reticulum membrane (SL-0097).

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/105/comments/1/subcellularLocations/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
  • UniProtKB:P05374

    Source assertion: UniProtKB:P05374 has the exact SGD cross-reference SGD:S000003389.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/105/uniProtKBCrossReferences/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
phosphatidylserine decarboxylase activity
gomodel:PHOSPHASERDECARB-RXN
occurs_in

Activity compartment supported by an inspected functional annotation. ECO:0000255 (HAMAP-Rule:MF_03208); ECO:0000269 (PubMed:11294902); ECO:0000269 (PubMed:17976194); ECO:0000269 (PubMed:23045528); ECO:0000269 (PubMed:23124206); ECO:0000269 (PubMed:25829489); ECO:0000269 (PubMed:29290583); ECO:0000269 (PubMed:30926815); ECO:0000269 (PubMed:34818062); ECO:0000269 (PubMed:8227017); ECO:0000269 (PubMed:8407984); ECO:0000269 (PubMed:8530379). Alternative isoenzymes may function elsewhere.

mitochondrion
GO:0005739
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 describes the corresponding catalytic function in the mitochondrion; this projection applies to the activity enabled by SGD:S000005113.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/1539/comments/0/texts/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
occurs_in

Activity compartment supported by an inspected functional annotation. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:11294902); ECO:0000269 (PubMed:20016005); ECO:0000269 (PubMed:24366873); ECO:0000269 (PubMed:7890739); ECO:0000269 (PubMed:7890740). Alternative isoenzymes may function elsewhere.

Golgi membrane
GO:0000139
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 describes the corresponding catalytic function in the Golgi membrane; this projection applies to the activity enabled by SGD:S000003402.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2090/comments/0/texts/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
phosphatidylserine decarboxylase activity
gomodel:YeastPathways_PHOSLIPSYN2-PWY-1/6a4c244800007485
occurs_in

Activity compartment supported by an inspected functional annotation. ECO:0000255 (HAMAP-Rule:MF_03209); ECO:0000269 (PubMed:11294902); ECO:0000269 (PubMed:20016005); ECO:0000269 (PubMed:24366873); ECO:0000269 (PubMed:7890739); ECO:0000269 (PubMed:7890740). Alternative isoenzymes may function elsewhere.

endosome membrane
GO:0010008
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 describes the corresponding catalytic function in the endosome membrane; this projection applies to the activity enabled by SGD:S000003402.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_subcellular_location%2Ccc_function%2Ccc_caution%2Corganism_id#/results/2090/comments/0/texts/0; sha256=95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d
cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
has_input

Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.

CDP-diacylglycerol(2-)
CHEBI:58332
  • UniProtKB:Q07560

    Source assertion: a CDP-1,2-diacyl-sn-glycerol + a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) = a cardiolipin + CMP + H(+)

    Source locationhttps://rest.uniprot.org/uniprotkb/Q07560.json [sha256:4776cb2392de0f791dccac79c1e4ce3b203239abfb46d2dcab9ae4ffada2c30d] #/comments/1/reaction
cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
has_input

Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.

1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)(1-)
CHEBI:64716
  • UniProtKB:Q07560

    Source assertion: a CDP-1,2-diacyl-sn-glycerol + a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) = a cardiolipin + CMP + H(+)

    Source locationhttps://rest.uniprot.org/uniprotkb/Q07560.json [sha256:4776cb2392de0f791dccac79c1e4ce3b203239abfb46d2dcab9ae4ffada2c30d] #/comments/1/reaction
cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
has_output

Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.

cardiolipin(2-)
CHEBI:62237
  • UniProtKB:Q07560

    Source assertion: a CDP-1,2-diacyl-sn-glycerol + a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) = a cardiolipin + CMP + H(+)

    Source locationhttps://rest.uniprot.org/uniprotkb/Q07560.json [sha256:4776cb2392de0f791dccac79c1e4ce3b203239abfb46d2dcab9ae4ffada2c30d] #/comments/1/reaction
cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
has_output

Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.

cytidine 5'-monophosphate(2-)
CHEBI:60377
  • UniProtKB:Q07560

    Source assertion: a CDP-1,2-diacyl-sn-glycerol + a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) = a cardiolipin + CMP + H(+)

    Source locationhttps://rest.uniprot.org/uniprotkb/Q07560.json [sha256:4776cb2392de0f791dccac79c1e4ce3b203239abfb46d2dcab9ae4ffada2c30d] #/comments/1/reaction
cardiolipin synthase (CMP-forming) activity
gomodel:CARDIOLIPSYN-RXN
has_output

Yeast CRD1 is the CMP-forming cardiolipin synthase: CDP-diacylglycerol and phosphatidylglycerol are inputs; cardiolipin, CMP and H+ are outputs. The imported bacterial glycerol-forming chemistry is superseded.

hydron
CHEBI:15378
  • UniProtKB:Q07560

    Source assertion: a CDP-1,2-diacyl-sn-glycerol + a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) = a cardiolipin + CMP + H(+)

    Source locationhttps://rest.uniprot.org/uniprotkb/Q07560.json [sha256:4776cb2392de0f791dccac79c1e4ce3b203239abfb46d2dcab9ae4ffada2c30d] #/comments/1/reaction
PSD2 Scer
SGD:S000003402
has_cofactor

UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The cofactor note explicitly describes a covalently bound pyruvoyl group; use the exact group class rather than free pyruvate. UniProt evidence: ECO:0000250 (UniProtKB:P0A8K1); ECO:0000255 (HAMAP-Rule:MF_03209) Binds 1 pyruvoyl group covalently per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P0A8K1); ECO:0000255 (HAMAP-Rule:MF_03209)

pyruvoyl group
CHEBI:45360
  • CHEBI:45360

    Source assertion: ChEBI labels CHEBI:45360 as pyruvoyl group.

    Source locationchebi.obo [Term] id: CHEBI:45360; name: pyruvoyl group
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 cross-references CHEBI:15361, but its note specifies a covalently bound pyruvoyl group; that group is projected to CHEBI:45360.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/2090/comments/0/cofactors/0; /results/2090/comments/0/note
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 has the exact SGD cross-reference SGD:S000003402.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/2090/uniProtKBCrossReferences/0
PSD2 Scer
SGD:S000003402
has_cofactor

UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The cofactor note explicitly describes a covalently bound pyruvoyl group; use the exact group class rather than free pyruvate. UniProt evidence: ECO:0000255 (PROSITE-ProRule:PRU00041)

calcium(2+)
CHEBI:29108
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 annotates CHEBI:29108 as a cofactor of this protein.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/2090/comments/1/cofactors/0
  • UniProtKB:P53037

    Source assertion: UniProtKB:P53037 has the exact SGD cross-reference SGD:S000003402.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/2090/uniProtKBCrossReferences/0
PSD1 Scer
SGD:S000005113
has_cofactor

UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The cofactor note explicitly describes a covalently bound pyruvoyl group; use the exact group class rather than free pyruvate. UniProt evidence: ECO:0000255 (HAMAP-Rule:MF_03208) Binds 1 pyruvoyl group covalently per subunit. UniProt note evidence: ECO:0000255 (HAMAP-Rule:MF_03208)

pyruvoyl group
CHEBI:45360
  • CHEBI:45360

    Source assertion: ChEBI labels CHEBI:45360 as pyruvoyl group.

    Source locationchebi.obo [Term] id: CHEBI:45360; name: pyruvoyl group
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 cross-references CHEBI:15361, but its note specifies a covalently bound pyruvoyl group; that group is projected to CHEBI:45360.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/1539/comments/0/cofactors/0; /results/1539/comments/0/note
  • UniProtKB:P39006

    Source assertion: UniProtKB:P39006 has the exact SGD cross-reference SGD:S000005113.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/1539/uniProtKBCrossReferences/0
CRD1 Scer
SGD:S000002301
has_cofactor

UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: The caution corrects the historical species attribution of a sequence; the current reviewed yeast entry and magnesium annotation remain applicable. UniProt evidence: ECO:0000269 (PubMed:2171667)

magnesium(2+)
CHEBI:18420
  • UniProtKB:Q07560

    Source assertion: UniProtKB:Q07560 annotates CHEBI:18420 as a cofactor of this protein.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/2821/comments/0/cofactors/0
  • UniProtKB:Q07560

    Source assertion: UniProtKB:Q07560 has the exact SGD cross-reference SGD:S000002301.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/2821/uniProtKBCrossReferences/0
CHO1 Scer
SGD:S000000828
has_cofactor

UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:6088519); ECO:0000269 (PubMed:6274497) Divalent metal cations; Mn(2+) or Mg(2+). UniProt note evidence: ECO:0000269 (PubMed:6088519)

manganese(2+)
CHEBI:29035
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 annotates CHEBI:29035 as a cofactor of this protein.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/205/comments/0/cofactors/0; /results/205/comments/0/note
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 has the exact SGD cross-reference SGD:S000000828.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/205/uniProtKBCrossReferences/0
CHO1 Scer
SGD:S000000828
has_cofactor

UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:6088519) Divalent metal cations; Mn(2+) or Mg(2+). UniProt note evidence: ECO:0000269 (PubMed:6088519)

magnesium(2+)
CHEBI:18420
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 annotates CHEBI:18420 as a cofactor of this protein.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/205/comments/0/cofactors/1; /results/205/comments/0/note
  • UniProtKB:P08456

    Source assertion: UniProtKB:P08456 has the exact SGD cross-reference SGD:S000000828.

    Source locationhttps://rest.uniprot.org/uniprotkb/stream?query=taxonomy_id%3A559292+AND+reviewed%3Atrue&format=json&fields=accession%2Cprotein_name%2Cxref_sgd%2Ccc_cofactor%2Corganism_id%2Ccc_caution [sha256:1378282d22c5518215707964664b55946f468ba74a227a6ea1bbf27db69ddbc4] #/results/205/uniProtKBCrossReferences/0

References

Curation history