valine degradation
gomodel:YeastPathways_PWY3O-4105
Valine degradation in Saccharomyces cerevisiae S288C transaminates L-valine to 3-methyl-2-oxobutanoate, decarboxylates 3-methyl-2-oxobutanoate to isobutyraldehyde, and reduces isobutyraldehyde with NADH to isobutanol.
- Pathway type
- amino acid degradation
- Organism scope
Pathway network
43 nodes · 125 asserted directed edges
Arrows show recorded subject → object relationships, not necessarily metabolic flow. Select a node for details or an arrow for evidence. Scroll, zoom or find a node to explore.
- Reaction / activity
- Chemical / cofactor
- Protein / complex
- Cell / process context
- Solid arrow: mechanistic relation
- Dashed arrow: membership, location or cofactor relation
Components and activities
| Node | Kind or role | Source direction |
|---|---|---|
Saccharomyces cerevisiae S288CNCBITaxon:559292 | taxon | |
carbon dioxideCHEBI:16526 | small molecule | |
L-valine catabolic processGO:0006574 | biological process | |
isobutyraldehydeCHEBI:48943 | small molecule | |
3-methyl-2-oxobutanoateCHEBI:11851 | lipid | |
ADH2 ScerSGD:S000004918 | protein | |
cytosolGO:0005829 | cellular component | |
isobutanolCHEBI:46645 | small molecule | |
PDC1 ScerSGD:S000004034 | protein | |
BAT1 ScerSGD:S000001251 | protein | |
NADH(2-)CHEBI:57945 | small molecule | |
L-glutamate(1-)CHEBI:29985 | small molecule | |
ADH5 ScerSGD:S000000349 | protein | |
2-oxoglutarate(2-)CHEBI:16810 | small molecule | |
PDC6 ScerSGD:S000003319 | protein | |
NAD(1-)CHEBI:57540 | small molecule | |
ADH1 ScerSGD:S000005446 | protein | |
ADH4 ScerSGD:S000003225 | protein | |
L-valine zwitterionCHEBI:57762 | small molecule | |
SFA1 ScerSGD:S000002327 | protein | |
ADH3 ScerSGD:S000004688 | protein | |
BAT2 ScerSGD:S000003909 | protein | |
PDC5 ScerSGD:S000004124 | protein | |
cytoplasmGO:0005737 | cellular component | |
nucleusGO:0005634 | cellular component | |
mitochondrial matrixGO:0005759 | cellular component | |
mitochondrionGO:0005739 | cellular component | |
mitochondrial inner membraneGO:0005743 | cellular component | |
zinc(2+)CHEBI:29105 | cofactor | |
magnesium(2+)CHEBI:18420 | cofactor | |
thiamine(1+) diphosphate(3-)CHEBI:58937 | cofactor | |
pyridoxal 5'-phosphate(2-)CHEBI:597326 | cofactor | |
iron(2+)CHEBI:29033 | cofactor | |
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | molecular activity | |
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | molecular activity | |
isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 | molecular activity | |
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | molecular activity | |
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | molecular activity | |
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | molecular activity | |
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 | molecular activity | |
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 | molecular activity | |
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 | molecular activity | |
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 | molecular activity | |
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 | molecular activity |
Mechanistic edges
| Subject | Predicate and description | Object | Evidence |
|---|---|---|---|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | has_output | carbon dioxideCHEBI:16526 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | provides_input_for | pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | provides_input_for | pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 | part_of | L-valine catabolic processGO:0006574 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 | has_input | isobutyraldehydeCHEBI:48943 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 | part_of | L-valine catabolic processGO:0006574 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | has_output | carbon dioxideCHEBI:16526 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 | has_input | isobutyraldehydeCHEBI:48943 |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | provides_input_for | pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | has_input | 3-methyl-2-oxobutanoateCHEBI:11851 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | has_output | isobutyraldehydeCHEBI:48943 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 | part_of | L-valine catabolic processGO:0006574 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 | has_input | isobutyraldehydeCHEBI:48943 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | part_of | L-valine catabolic processGO:0006574 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 | has_input | isobutyraldehydeCHEBI:48943 |
|
ADH2 ScerSGD:S000004918 | enables | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | occurs_in | cytosolGO:0005829 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | has_output | 3-methyl-2-oxobutanoateCHEBI:11851 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | has_output | isobutyraldehydeCHEBI:48943 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 | has_output | isobutanolCHEBI:46645 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | part_of | L-valine catabolic processGO:0006574 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | provides_input_for | isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 |
|
PDC1 ScerSGD:S000004034 | enables | 3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 |
|
BAT1 ScerSGD:S000001251 | enables | L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | part_of | L-valine catabolic processGO:0006574 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 | occurs_in | cytosolGO:0005829 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | provides_input_for | isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 | has_output | isobutanolCHEBI:46645 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 | has_input | NADH(2-)CHEBI:57945 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | has_output | L-glutamate(1-)CHEBI:29985 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 | has_output | isobutanolCHEBI:46645 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | occurs_in | cytosolGO:0005829 |
|
ADH5 ScerSGD:S000000349 | enables | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 | has_input | NADH(2-)CHEBI:57945 |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | has_input | 2-oxoglutarate(2-)CHEBI:16810 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 | has_input | NADH(2-)CHEBI:57945 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | has_input | 2-oxoglutarate(2-)CHEBI:16810 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | has_output | carbon dioxideCHEBI:16526 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | provides_input_for | 3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 |
|
isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 | has_output | isobutanolCHEBI:46645 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | provides_input_for | isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 | has_input | isobutyraldehydeCHEBI:48943 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 | part_of | L-valine catabolic processGO:0006574 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | has_output | isobutyraldehydeCHEBI:48943 |
|
PDC6 ScerSGD:S000003319 | enables | pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | has_input | 3-methyl-2-oxobutanoateCHEBI:11851 |
|
isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 | has_input | isobutyraldehydeCHEBI:48943 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 | occurs_in | cytosolGO:0005829 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 | has_output | NAD(1-)CHEBI:57540 |
|
ADH1 ScerSGD:S000005446 | enables | isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | has_output | 3-methyl-2-oxobutanoateCHEBI:11851 |
|
isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 | occurs_in | cytosolGO:0005829 |
|
isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 | has_output | NAD(1-)CHEBI:57540 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 | has_input | NADH(2-)CHEBI:57945 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 | has_output | NAD(1-)CHEBI:57540 |
|
ADH4 ScerSGD:S000003225 | enables | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | has_output | L-glutamate(1-)CHEBI:29985 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 | has_input | NADH(2-)CHEBI:57945 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 | has_output | NAD(1-)CHEBI:57540 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | occurs_in | cytosolGO:0005829 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | part_of | L-valine catabolic processGO:0006574 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | has_input | 3-methyl-2-oxobutanoateCHEBI:11851 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 | has_output | NAD(1-)CHEBI:57540 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 | occurs_in | cytosolGO:0005829 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | provides_input_for | pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 | part_of | L-valine catabolic processGO:0006574 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 | has_output | NAD(1-)CHEBI:57540 |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | has_input | L-valine zwitterionCHEBI:57762 |
|
3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 | part_of | L-valine catabolic processGO:0006574 |
|
isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 | has_input | NADH(2-)CHEBI:57945 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | occurs_in | cytosolGO:0005829 |
|
SFA1 ScerSGD:S000002327 | enables | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 | has_output | isobutanolCHEBI:46645 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003142 |
|
ADH3 ScerSGD:S000004688 | enables | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003163 |
|
L-valine + 2-oxoglutarate <=> L-glutamate + 3-methyl-2-oxobutanoategomodel:BRANCHED-CHAINAMINOTRANSFERVAL-RXN | provides_input_for | 3-methyl-2-oxobutanoate -> isobutanal + CO2gomodel:RXN3O-4133 |
|
BAT2 ScerSGD:S000003909 | enables | L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 |
|
PDC5 ScerSGD:S000004124 | enables | pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 |
|
alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003220 | has_output | isobutanolCHEBI:46645 |
|
isobutanal + NADH -> isobutanol + NAD+gomodel:RXN3O-4141 | part_of | L-valine catabolic processGO:0006574 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003112 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003183 |
|
pyruvate decarboxylase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003124 | provides_input_for | alcohol dehydrogenase (NAD+) activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003202 |
|
L-isoleucine:2-oxoglutarate transaminase activitygomodel:YeastPathways_PWY3O-4105/6a4c244800003097 | has_input | L-valine zwitterionCHEBI:57762 |
|
ADH2 ScerSGD:S000004918 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095); ECO:0000269 (PubMed:2937632) | cytoplasmGO:0005737 |
|
PDC1 ScerSGD:S000004034 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | cytoplasmGO:0005737 |
|
PDC1 ScerSGD:S000004034 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | nucleusGO:0005634 |
|
BAT1 ScerSGD:S000001251 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:21267457); ECO:0000269 (PubMed:8798704) | mitochondrial matrixGO:0005759 |
|
ADH5 ScerSGD:S000000349 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | cytoplasmGO:0005737 |
|
PDC6 ScerSGD:S000003319 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | cytoplasmGO:0005737 |
|
ADH1 ScerSGD:S000005446 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:2937632) | cytoplasmGO:0005737 |
|
ADH4 ScerSGD:S000003225 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | mitochondrionGO:0005739 |
|
SFA1 ScerSGD:S000002327 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | cytoplasmGO:0005737 |
|
SFA1 ScerSGD:S000002327 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:16823961) | mitochondrionGO:0005739 |
|
ADH3 ScerSGD:S000004688 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:1101965); ECO:0000269 (PubMed:2188098); ECO:0000269 (PubMed:2943982) | mitochondrial matrixGO:0005759 |
|
ADH3 ScerSGD:S000004688 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:2937632) | mitochondrial inner membraneGO:0005743 |
|
BAT2 ScerSGD:S000003909 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:21267457); ECO:0000269 (PubMed:8798704) | cytoplasmGO:0005737 |
|
PDC5 ScerSGD:S000004124 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | cytoplasmGO:0005737 |
|
PDC5 ScerSGD:S000004124 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | nucleusGO:0005634 |
|
ADH2 ScerSGD:S000004918 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P00330) Binds 2 Zn(2+) ions per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P00330) | zinc(2+)CHEBI:29105 |
|
PDC1 ScerSGD:S000004034 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:10651824) Binds 1 Mg(2+) per subunit. UniProt note evidence: ECO:0000269 (PubMed:10651824) | magnesium(2+)CHEBI:18420 |
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PDC1 ScerSGD:S000004034 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:10651824) Binds 1 thiamine pyrophosphate per subunit. UniProt note evidence: ECO:0000269 (PubMed:10651824) | thiamine(1+) diphosphate(3-)CHEBI:58937 |
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BAT1 ScerSGD:S000001251 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. Reviewed source qualification: Disputed growth phenotypes do not address PLP binding; retain the similarity-based PLP annotation. UniProt evidence: ECO:0000250 (UniProtKB:P0AB80) | pyridoxal 5'-phosphate(2-)CHEBI:597326 |
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ADH5 ScerSGD:S000000349 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P00330) Binds 2 Zn(2+) ions per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P00330) | zinc(2+)CHEBI:29105 |
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PDC6 ScerSGD:S000003319 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P06169) Binds 1 Mg(2+) per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P06169) | magnesium(2+)CHEBI:18420 |
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PDC6 ScerSGD:S000003319 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P06169) Binds 1 thiamine pyrophosphate per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P06169) | thiamine(1+) diphosphate(3-)CHEBI:58937 |
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ADH1 ScerSGD:S000005446 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:25157460); ECO:0000269 (PubMed:26743849) Binds 2 Zn(2+) ions per subunit. UniProt note evidence: ECO:0000269 (PubMed:25157460); ECO:0000269 (PubMed:26743849) | zinc(2+)CHEBI:29105 |
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ADH4 ScerSGD:S000003225 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:3282541) Zinc. May bind iron when zinc levels are limiting. UniProt note evidence: ECO:0000269 (PubMed:3282541) | zinc(2+)CHEBI:29105 |
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ADH4 ScerSGD:S000003225 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:3282541) Zinc. May bind iron when zinc levels are limiting. UniProt note evidence: ECO:0000269 (PubMed:3282541) | iron(2+)CHEBI:29033 |
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SFA1 ScerSGD:S000002327 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P06525) Binds 2 Zn(2+) ions per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P06525) | zinc(2+)CHEBI:29105 |
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ADH3 ScerSGD:S000004688 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P00330) Binds 2 Zn(2+) ions per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P00330) | zinc(2+)CHEBI:29105 |
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BAT2 ScerSGD:S000003909 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: not specified | pyridoxal 5'-phosphate(2-)CHEBI:597326 |
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PDC5 ScerSGD:S000004124 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P06169) Binds 1 Mg(2+) per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P06169) | magnesium(2+)CHEBI:18420 |
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PDC5 ScerSGD:S000004124 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P06169) Binds 1 thiamine pyrophosphate per subunit. UniProt note evidence: ECO:0000250 (UniProtKB:P06169) | thiamine(1+) diphosphate(3-)CHEBI:58937 |
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References
gomodel:YeastPathways_PWY3O-4105SGD GO-CAM valine degradation pathway PWY3O-4105 (source version: Pinned Noctua JSON archive; model date 2026-07-15; member ./YeastPathways_PWY3O-4105.json)UniProtKB:P00331Reviewed UniProtKB P00331 location annotations (source version: UniProt release 2026_03)UniProtKB:P06169Reviewed UniProtKB P06169 location annotations (source version: UniProt release 2026_03)UniProtKB:P38891Reviewed UniProtKB P38891 location annotations (source version: UniProt release 2026_03)UniProtKB:P38113Reviewed UniProtKB P38113 location annotations (source version: UniProt release 2026_03)UniProtKB:P26263Reviewed UniProtKB P26263 location annotations (source version: UniProt release 2026_03)UniProtKB:P00330Reviewed UniProtKB P00330 location annotations (source version: UniProt release 2026_03)UniProtKB:P10127Reviewed UniProtKB P10127 location annotations (source version: UniProt release 2026_03)UniProtKB:P32771Reviewed UniProtKB P32771 location annotations (source version: UniProt release 2026_03)UniProtKB:P07246Reviewed UniProtKB P07246 location annotations (source version: UniProt release 2026_03)UniProtKB:P47176Reviewed UniProtKB P47176 location annotations (source version: UniProt release 2026_03)UniProtKB:P16467Reviewed UniProtKB P16467 location annotations (source version: UniProt release 2026_03)
Curation history
- Codex; review-causal-graph; Reviewed every native GO-CAM fact; preserved precise input/output, causal, location, membership and complex-part relations with traceable structured source evidence. Kept distinct generic physical instances and recorded source-scope exclusions in the cohort review ledger.
- Codex
- EDIT — Audit causal activity compartments and preserve scoped protein location evidence
Reviewed all 11 activity location assignments and 11 mapped physical proteins against reviewed S288C UniProt release2026_03 location/function/caution batch SHA256 95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d. Added 15 independently supported location edges and quarantined 3 generic cytosol source assertions. Mapped physical protein locations via exact SGD cross-references; retained source ECO grades, molecular form and conditional notes. Physical protein location alone never generates activity location. Explicitly inspected functional assertions support bounded activity projections. Every original activity location and exclusion is recorded in reports/causal_graph_review/gocam-location-review.json. No independent location annotation is treated as an evidence gap, not a negative result. Cytoplasm is not narrowed to cytosol. Microsome fractions are not projected as in-vivo organelles. Semantic validation passed all85 records;4 independent source-role acceptance tests passed.
- EDIT — Audit causal activity compartments and preserve scoped protein location evidence