fatty acid oxidation pathway
gomodel:YeastPathways_YEAST-FAO-PWY
Fatty acid oxidation in Saccharomyces cerevisiae S288C connects acyl-CoA activation, acyl-CoA dehydrogenation, enoyl-CoA hydration, hydroxyacyl-CoA dehydrogenation, thiolysis, and auxiliary unsaturated fatty acid oxidation steps in the SGD GO-CAM fatty acid oxidation pathway.
- Pathway type
- fatty acid oxidation
- Organism scope
Pathway network
50 nodes · 109 asserted directed edges
Arrows show recorded subject → object relationships, not necessarily metabolic flow. Select a node for details or an arrow for evidence. Scroll, zoom or find a node to explore.
- Reaction / activity
- Chemical / cofactor
- Protein / complex
- Cell / process context
- Solid arrow: mechanistic relation
- Dashed arrow: membership, location or cofactor relation
Components and activities
| Node | Kind or role | Source direction |
|---|---|---|
Saccharomyces cerevisiae S288CNCBITaxon:559292 | taxon | |
coenzyme A(4-)CHEBI:57287 | small molecule | |
waterCHEBI:15377 | small molecule | |
3-oxo-fatty acyl-CoACHEBI:15489 | lipid | |
fatty acid oxidationGO:0019395 | biological process | |
FAA4 ScerSGD:S000004860 | protein | |
2,3,4-saturated fatty acid(1-)CHEBI:71627 | lipid | |
cytosolGO:0005829 | cellular component | |
saturated fatty acyl-CoA(4-)CHEBI:77332 | small molecule | |
trans-2-enoyl-CoACHEBI:50998 | lipid | |
diphosphoric acidCHEBI:29888 | small molecule | |
hydrogen peroxideCHEBI:16240 | small molecule | |
FOX2 ScerSGD:S000001717 | protein | |
cis-3-enoyl-CoACHEBI:27773 | lipid | |
adenosine 5'-monophosphate(2-)CHEBI:456215 | small molecule | |
ATP(4-)CHEBI:30616 | small molecule | |
ECI1 ScerSGD:S000004274 | protein | |
FAA1 ScerSGD:S000005844 | protein | |
hydronCHEBI:15378 | small molecule | |
dioxygenCHEBI:15379 | small molecule | |
POT1 ScerSGD:S000001422 | protein | |
FAT1 ScerSGD:S000000245 | protein | |
POX1 ScerSGD:S000003173 | protein | |
DCI1 ScerSGD:S000005706 | protein | |
NAD(1-)CHEBI:57540 | small molecule | |
acetyl-CoA(4-)CHEBI:57288 | small molecule | |
NADH(2-)CHEBI:57945 | small molecule | |
FAA2 ScerSGD:S000000817 | protein | |
FAA3 ScerSGD:S000001271 | protein | |
lipid dropletGO:0005811 | cellular component | |
peroxisomeGO:0005777 | cellular component | |
plasma membraneGO:0005886 | cellular component | |
mitochondrial intermembrane spaceGO:0005758 | cellular component | |
peroxisomal membraneGO:0005778 | cellular component | |
cytoplasmGO:0005737 | cellular component | |
(R)-3-hydroxyacyl-CoA(4-)CHEBI:57319 | small molecule | |
(3E,5Z)-dienoyl-CoA(4-)CHEBI:85110 | small molecule | |
6-saturated-trans,trans-2,4-dienoyl-CoA(4-)CHEBI:85111 | small molecule | |
magnesium(2+)CHEBI:18420 | cofactor | |
FAD(3-)CHEBI:57692 | cofactor | |
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | molecular activity | |
a (3E,5Z)-dienoyl-CoA => a (2E,4E)-(5,6-saturated)-dienoyl-CoARHEA:45241 | molecular activity | left to right |
a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 | molecular activity | left to right |
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | molecular activity | |
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | molecular activity | left to right |
a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 | molecular activity | |
delta(3)-delta(2)-enoyl-CoA isomerase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006775 | molecular activity | |
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | molecular activity | |
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | molecular activity | |
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | molecular activity | |
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | molecular activity |
Mechanistic edges
| Subject | Predicate and description | Object | Evidence |
|---|---|---|---|
a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 | provides_input_for | a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | has_input | coenzyme A(4-)CHEBI:57287 |
|
a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 | has_input | waterCHEBI:15377 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | has_input | 3-oxo-fatty acyl-CoACHEBI:15489 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | part_of | fatty acid oxidationGO:0019395 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | has_input | coenzyme A(4-)CHEBI:57287 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | provides_input_for | a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 |
|
FAA4 ScerSGD:S000004860 | enables | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | has_input | 2,3,4-saturated fatty acid(1-)CHEBI:71627 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | has_output | saturated fatty acyl-CoA(4-)CHEBI:77332 |
|
delta(3)-delta(2)-enoyl-CoA isomerase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006775 | has_output | trans-2-enoyl-CoACHEBI:50998 |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | part_of | fatty acid oxidationGO:0019395 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | has_output | saturated fatty acyl-CoA(4-)CHEBI:77332 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | has_output | diphosphoric acidCHEBI:29888 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | provides_input_for | a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | has_input | coenzyme A(4-)CHEBI:57287 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | has_output | saturated fatty acyl-CoA(4-)CHEBI:77332 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | has_output | saturated fatty acyl-CoA(4-)CHEBI:77332 |
|
a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 | has_output | hydrogen peroxideCHEBI:16240 |
|
delta(3)-delta(2)-enoyl-CoA isomerase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006775 | part_of | fatty acid oxidationGO:0019395 |
|
FOX2 ScerSGD:S000001717 | enables | a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 |
|
a (3E,5Z)-dienoyl-CoA => a (2E,4E)-(5,6-saturated)-dienoyl-CoARHEA:45241 | has_input | (3E,5Z)-dienoyl-CoA(4-)CHEBI:85110 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | has_output | adenosine 5'-monophosphate(2-)CHEBI:456215 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | has_input | ATP(4-)CHEBI:30616 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | part_of | fatty acid oxidationGO:0019395 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | has_input | ATP(4-)CHEBI:30616 |
|
a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 | has_input | trans-2-enoyl-CoACHEBI:50998 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | has_input | ATP(4-)CHEBI:30616 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | part_of | fatty acid oxidationGO:0019395 |
|
a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 | has_output | (R)-3-hydroxyacyl-CoA(4-)CHEBI:57319 |
|
ECI1 ScerSGD:S000004274 | enables | delta(3)-delta(2)-enoyl-CoA isomerase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006775 |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | has_output | adenosine 5'-monophosphate(2-)CHEBI:456215 |
|
a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 | part_of | fatty acid oxidationGO:0019395 |
|
FAA1 ScerSGD:S000005844 | enables | a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | has_input | coenzyme A(4-)CHEBI:57287 |
|
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | has_output | hydronCHEBI:15378 |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | has_output | diphosphoric acidCHEBI:29888 |
|
a (3E,5Z)-dienoyl-CoA => a (2E,4E)-(5,6-saturated)-dienoyl-CoARHEA:45241 | part_of | fatty acid oxidationGO:0019395 |
|
a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 | provides_input_for | a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 |
|
a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 | has_input | dioxygenCHEBI:15379 |
|
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | has_output | 3-oxo-fatty acyl-CoACHEBI:15489 |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | has_input | 2,3,4-saturated fatty acid(1-)CHEBI:71627 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | provides_input_for | a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | has_input | 2,3,4-saturated fatty acid(1-)CHEBI:71627 |
|
POT1 ScerSGD:S000001422 | enables | a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | has_input | ATP(4-)CHEBI:30616 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | has_input | 2,3,4-saturated fatty acid(1-)CHEBI:71627 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | has_input | coenzyme A(4-)CHEBI:57287 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | provides_input_for | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 |
|
FOX2 ScerSGD:S000001717 | enables | a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | provides_input_for | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | provides_input_for | a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 |
|
FAT1 ScerSGD:S000000245 | enables | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 |
|
a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 | has_input | saturated fatty acyl-CoA(4-)CHEBI:77332 |
|
POX1 ScerSGD:S000003173 | enables | a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | has_output | diphosphoric acidCHEBI:29888 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | has_output | diphosphoric acidCHEBI:29888 |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | provides_input_for | a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | provides_input_for | a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 |
|
a (2E)-enoyl-CoA + H2O => a (3R)-3-hydroxyacyl-CoARHEA:26528 | part_of | fatty acid oxidationGO:0019395 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | has_output | adenosine 5'-monophosphate(2-)CHEBI:456215 |
|
delta(3)-delta(2)-enoyl-CoA isomerase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006775 | provides_input_for | a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | has_input | coenzyme A(4-)CHEBI:57287 |
|
DCI1 ScerSGD:S000005706 | enables | a (3E,5Z)-dienoyl-CoA => a (2E,4E)-(5,6-saturated)-dienoyl-CoARHEA:45241 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | has_output | diphosphoric acidCHEBI:29888 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | has_output | adenosine 5'-monophosphate(2-)CHEBI:456215 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | has_output | adenosine 5'-monophosphate(2-)CHEBI:456215 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 | part_of | fatty acid oxidationGO:0019395 |
|
a 2,3,4-saturated fatty acyl CoA + oxygen -> a trans-2-enoyl-CoA + hydrogen peroxidegomodel:RXN-11026 | has_output | trans-2-enoyl-CoACHEBI:50998 |
|
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | has_input | NAD(1-)CHEBI:57540 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | has_output | acetyl-CoA(4-)CHEBI:57288 |
|
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | part_of | fatty acid oxidationGO:0019395 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | provides_input_for | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 |
|
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | has_output | NADH(2-)CHEBI:57945 |
|
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | has_input | (R)-3-hydroxyacyl-CoA(4-)CHEBI:57319 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | occurs_in | cytosolGO:0005829 |
|
delta(3)-delta(2)-enoyl-CoA isomerase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006775 | has_input | cis-3-enoyl-CoACHEBI:27773 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831 | has_input | 2,3,4-saturated fatty acid(1-)CHEBI:71627 |
|
a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN | provides_input_for | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | has_output | saturated fatty acyl-CoA(4-)CHEBI:77332 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 | part_of | fatty acid oxidationGO:0019395 |
|
FAA2 ScerSGD:S000000817 | enables | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787 |
|
FAA3 ScerSGD:S000001271 | enables | long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810 |
|
a (3E,5Z)-dienoyl-CoA => a (2E,4E)-(5,6-saturated)-dienoyl-CoARHEA:45241 | has_output | 6-saturated-trans,trans-2,4-dienoyl-CoA(4-)CHEBI:85111 |
|
a (3R)-3-hydroxyacyl-CoA + NAD(+) => a 3-oxoacyl-CoA + NADH + H(+)RHEA:32712 | provides_input_for | a 2,3,4-saturated fatty acyl CoA + acetyl-CoA <- a 3-oxoacyl-CoA + coenzyme Agomodel:KETOACYLCOATHIOL-RXN |
|
a 2,3,4-saturated fatty acid + ATP + coenzyme A -> a 2,3,4-saturated fatty acyl CoA + AMP + diphosphategomodel:ACYLCOASYN-RXN | has_input | ATP(4-)CHEBI:30616 |
|
long-chain fatty acid-CoA ligase activitygomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852 | has_output | saturated fatty acyl-CoA(4-)CHEBI:77332 |
|
FAA4 ScerSGD:S000004860 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:21820081); ECO:0000269 (PubMed:24868093) | lipid dropletGO:0005811 |
|
FOX2 ScerSGD:S000001717 | located_in Physical protein location from reviewed UniProt. evidence code not specified by source | peroxisomeGO:0005777 |
|
ECI1 ScerSGD:S000004274 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:10381339); ECO:0000269 (PubMed:11302517); ECO:0000269 (PubMed:9837886) Source qualification: This location is DCI1 dependent | peroxisomeGO:0005777 |
|
FAA1 ScerSGD:S000005844 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:10515935); ECO:0000269 (PubMed:21820081); ECO:0000269 (PubMed:24868093) | lipid dropletGO:0005811 |
|
FAA1 ScerSGD:S000005844 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:27136724) | plasma membraneGO:0005886 |
|
POT1 ScerSGD:S000001422 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:7754706); ECO:0000269 (PubMed:8125978) | peroxisomeGO:0005777 |
|
POT1 ScerSGD:S000001422 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:22984289) | mitochondrial intermembrane spaceGO:0005758 |
|
FAT1 ScerSGD:S000000245 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:10515935); ECO:0000269 (PubMed:21820081); ECO:0000269 (PubMed:24868093) | lipid dropletGO:0005811 |
|
FAT1 ScerSGD:S000000245 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:17679730) Topology: Multi-pass membrane protein. | plasma membraneGO:0005886 |
|
FAT1 ScerSGD:S000000245 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:22493507) Topology: Multi-pass membrane protein. | peroxisomal membraneGO:0005778 |
|
FAT1 ScerSGD:S000000245 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:11330068) | peroxisomeGO:0005777 |
|
POX1 ScerSGD:S000003173 | located_in Physical protein location from reviewed UniProt. evidence code not specified by source | peroxisomeGO:0005777 |
|
DCI1 ScerSGD:S000005706 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:10381339); ECO:0000269 (PubMed:10455114); ECO:0000269 (PubMed:10639339) | peroxisomeGO:0005777 |
|
FAA2 ScerSGD:S000000817 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:7988550) Source qualification: Imported via the peroxisome targeting signal type 1 (PTS1)-dependent protein import pathway | cytoplasmGO:0005737 |
|
FAA2 ScerSGD:S000000817 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:8670886) Topology: Peripheral membrane protein. Orientation: Matrix side. Source qualification: Imported via the peroxisome targeting signal type 1 (PTS1)-dependent protein import pathway | peroxisomal membraneGO:0005778 |
|
FAA3 ScerSGD:S000001271 | located_in Physical protein location from reviewed UniProt. ECO:0000269 (PubMed:14562095) | plasma membraneGO:0005886 |
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a (3E,5Z)-dienoyl-CoA => a (2E,4E)-(5,6-saturated)-dienoyl-CoARHEA:45241 | occurs_in Activity compartment supported by an inspected functional annotation. ECO:0000269 (PubMed:10381339); ECO:0000269 (PubMed:10455114); ECO:0000269 (PubMed:11302517). Alternative isoenzymes may function elsewhere. | peroxisomeGO:0005777 |
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FAA4 ScerSGD:S000004860 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 | magnesium(2+)CHEBI:18420 |
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FAA1 ScerSGD:S000005844 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000269 (PubMed:8206942) | magnesium(2+)CHEBI:18420 |
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POX1 ScerSGD:S000003173 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: not specified | FAD(3-)CHEBI:57692 |
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FAA2 ScerSGD:S000000817 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P30624) | magnesium(2+)CHEBI:18420 |
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FAA3 ScerSGD:S000001271 | has_cofactor UniProtKB reviewed (Swiss-Prot) annotation. UniProt evidence: ECO:0000250 (UniProtKB:P30624) | magnesium(2+)CHEBI:18420 |
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References
gomodel:YeastPathways_YEAST-FAO-PWYSGD GO-CAM fatty acid oxidation pathway - imported from: Saccharomyces Genome Database (source version: Pinned Noctua JSON archive; model date 2026-07-22; member ./YeastPathways_YEAST-FAO-PWY.json)UniProtKB:P47912Reviewed UniProtKB P47912 location annotations (source version: UniProt release 2026_03)UniProtKB:Q02207Reviewed UniProtKB Q02207 location annotations (source version: UniProt release 2026_03)UniProtKB:Q05871Reviewed UniProtKB Q05871 location annotations (source version: UniProt release 2026_03)UniProtKB:P30624Reviewed UniProtKB P30624 location annotations (source version: UniProt release 2026_03)UniProtKB:P27796Reviewed UniProtKB P27796 location annotations (source version: UniProt release 2026_03)UniProtKB:P38225Reviewed UniProtKB P38225 location annotations (source version: UniProt release 2026_03)UniProtKB:P13711Reviewed UniProtKB P13711 location annotations (source version: UniProt release 2026_03)UniProtKB:Q08558Reviewed UniProtKB Q08558 location annotations (source version: UniProt release 2026_03)UniProtKB:P39518Reviewed UniProtKB P39518 location annotations (source version: UniProt release 2026_03)UniProtKB:P39002Reviewed UniProtKB P39002 location annotations (source version: UniProt release 2026_03)
Curation history
- Codex; review-causal-graph; Reviewed every native GO-CAM fact; preserved precise input/output, causal, location, membership and complex-part relations with traceable structured source evidence. Kept distinct generic physical instances and recorded source-scope exclusions in the cohort review ledger.
- Codex; edited; Correct FOX2 stereochemistry and distinguish DCI1 dienoyl auxiliary chemistry from ECI1 monoene isomerization.
- Codex
- EDIT — Audit causal activity compartments and preserve scoped protein location evidence
Reviewed all 11 activity location assignments and 10 mapped physical proteins against reviewed S288C UniProt release2026_03 location/function/caution batch SHA256 95f72dcc644358c480e0e59f996cf88533558b5fa4256460a030e0a1eaf9678d. Added 17 independently supported location edges and quarantined 10 generic cytosol source assertions. Mapped physical protein locations via exact SGD cross-references; retained source ECO grades, molecular form and conditional notes. Physical protein location alone never generates activity location. Explicitly inspected functional assertions support bounded activity projections. Every original activity location and exclusion is recorded in reports/causal_graph_review/gocam-location-review.json. No independent location annotation is treated as an evidence gap, not a negative result. Cytoplasm is not narrowed to cytosol. Microsome fractions are not projected as in-vivo organelles. Semantic validation passed all85 records;4 independent source-role acceptance tests passed.
- EDIT — Audit causal activity compartments and preserve scoped protein location evidence
- Codex
- EDIT — Correct FOX2 stereochemistry and distinguish DCI1 dienoyl auxiliary chemistry from ECI1 monoene isomerization.
User-authorized full causal graph curation. Correct FOX2 stereochemistry and distinguish DCI1 dienoyl auxiliary chemistry from ECI1 monoene isomerization. Independent UniProt release2026_03 annotations, Rhea139 and ChEBI255 were inspected; primary literature was checked for the taxon/function distinctions. Exact source pointers and superseded edge assertions are retained in reports/causal_graph_review/gocam-chemical-corrections.json. Native schema validation and focused biochemical regression tests were run. Shared final rendering and full gates are performed by the coordinating agent.
- EDIT — Correct FOX2 stereochemistry and distinguish DCI1 dienoyl auxiliary chemistry from ECI1 monoene isomerization.