lc_2

CultureMech:003842 bacterial DEFINED LIQUID
Original name: LC 2

Overview

External ontology
komodo.medium:1132 (source link unavailable) — LC 2
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'for_dsm_22980', 'source': 'KOMODO', 'source_id': 'komodo.medium:1132.1', 'original_category': 'bacterial'}
pH
6.8
Notes
Source: KOMODO ModelSEED | ID: 1132 | DSMZ Medium: 1132 (mediadive.medium:1132) | Aerobic: No

Composition

flowchart LR
    CultureMech_003842["lc_2"]
    ing0_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_003842 --> ing0_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing0_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing1_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_003842 --> ing1_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing1_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing2_KNO3["KNO3"]
    CultureMech_003842 --> ing2_KNO3
    CHEBI_63043["CHEBI:63043"]
    ing2_KNO3 -.-> CHEBI_63043
    ing3_HEPES_buffer["HEPES buffer"]
    CultureMech_003842 --> ing3_HEPES_buffer
    CHEBI_46756["CHEBI:46756"]
    ing3_HEPES_buffer -.-> CHEBI_46756
    ing4_Fe_III_NH4_EDTA["Fe(III)NH4-EDTA"]
    CultureMech_003842 --> ing4_Fe_III_NH4_EDTA
    ing5_Methanol["Methanol"]
    CultureMech_003842 --> ing5_Methanol
    CHEBI_17790["CHEBI:17790"]
    ing5_Methanol -.-> CHEBI_17790
    ing6_HCl["HCl"]
    CultureMech_003842 --> ing6_HCl
    CHEBI_17883["CHEBI:17883"]
    ing6_HCl -.-> CHEBI_17883
    ing7_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
    CultureMech_003842 --> ing7_FeCl2_x_4_H2O
    CHEBI_86249["CHEBI:86249"]
    ing7_FeCl2_x_4_H2O -.-> CHEBI_86249
    ing8_ZnCl2["ZnCl2"]
    CultureMech_003842 --> ing8_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing8_ZnCl2 -.-> CHEBI_49976
    ing9_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_003842 --> ing9_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing9_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing10_H3BO3["H3BO3"]
    CultureMech_003842 --> ing10_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing10_H3BO3 -.-> CHEBI_33118
    ing11_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_003842 --> ing11_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing11_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing12_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_003842 --> ing12_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing12_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing13_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_003842 --> ing13_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing13_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing14_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_003842 --> ing14_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing14_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing15_Na2HPO4["Na2HPO4"]
    CultureMech_003842 --> ing15_Na2HPO4
    CHEBI_34683["CHEBI:34683"]
    ing15_Na2HPO4 -.-> CHEBI_34683
    ing16_KH2PO4["KH2PO4"]
    CultureMech_003842 --> ing16_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing16_KH2PO4 -.-> CHEBI_63036

Ingredients (17)

# Ingredient Concentration Ontology Notes
1 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
1 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
2 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.2 G_PER_L CHEBI:86158
calcium chloride dihydrate
3 KNO3
K.NO3 101.102 g/mol
0.05 G_PER_L CHEBI:63043
potassium nitrate
4 HEPES buffer 0.4766 G_PER_L CHEBI:46756
HEPES
5 Fe(III)NH4-EDTA 1 G_PER_L
6 Methanol
CH4O 32.042 g/mol
0.2376 G_PER_L CHEBI:17790
methanol
7 HCl
HCl 36.461 g/mol
2.5 G_PER_L CHEBI:17883
hydrogen chloride
8 FeCl2 x 4 H2O
Cl2Fe.4H2O 198.811 g/mol
1.5 G_PER_L CHEBI:86249
iron dichloride tetrahydrate
9 ZnCl2
2Cl.Zn 136.296 g/mol
0.07 G_PER_L CHEBI:49976
zinc dichloride
10 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.1 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
11 H3BO3
H3BO3 61.833 g/mol
0.006 G_PER_L CHEBI:33118
boric acid
12 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.19 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
13 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.002 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
14 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.024 G_PER_L CHEBI:34887
nickel dichloride
15 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.036 G_PER_L CHEBI:75213
sodium molybdate dihydrate
16 Na2HPO4
HO4P.2Na 141.958 g/mol
36 G_PER_L CHEBI:34683
disodium hydrogenphosphate
17 KH2PO4
H2O4P.K 136.084 g/mol
14 G_PER_L CHEBI:63036
potassium dihydrogen phosphate

Target organisms

No target organisms are recorded.

Provenance

Merged from 3 source records.

TimestampCuratorActionNotes
2026-06-14T05:58:58.561437+00:00 idnf-grounding-fix-v1.0 Fixed ID_NOT_FOUND term groundings Absent/obsolete CHEBI term ids fixed - 1 re-grounded to the correct CHEBI, 0 de-grounded (mixture or unverifiable).
2026-01-27T01:15:01.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 1132
2026-02-03T11:18:55.193350 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 1132
2026-03-13T06:19:22.661093Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:003842
2026-03-17T06:29:42.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:37.081891+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "LC 2" to "lc_2" for consistent matching
2026-06-05T07:40:19.241541+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 14 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:37:34.181354+00:00 primary-term-regrounding-v1.0 Re-grounded wrong primary term id (OAK-verified) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-06-10T07:46:43.576636+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:40.409688+00:00 recipe-merger Merged 3 duplicate recipes into canonical record Sources: KOMODO_1132_LC_2, for_dsm_22980, lc_2
2026-08-06T03:04:40.409761+00:00 merge_recipes.py MERGED_RECIPES merged 3 source recipe(s) on fingerprint 8075f111644c58b2392997d2fd4f35dd262c09f8da2a4065b336b30bc1c4d6a9