capnocytophaga_medium

CultureMech:005049 bacterial COMPLEX LIQUID
Original name: CAPNOCYTOPHAGA medium

Overview

External ontology
komodo.medium:340 (source link unavailable) — CAPNOCYTOPHAGA medium
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'medium_340_modified_for_dsm_7271', 'source': 'KOMODO', 'source_id': 'komodo.medium:340_7271', 'original_category': 'bacterial'}
pH
7.0
Notes
Source: KOMODO ModelSEED | ID: 340 | DSMZ Medium: 340 (mediadive.medium:340) | Aerobic: Yes

Composition

flowchart LR
    CultureMech_005049["capnocytophaga_medium"]
    ing0_Trypticase["Trypticase"]
    CultureMech_005049 --> ing0_Trypticase
    ing1_Yeast_extract["Yeast extract"]
    CultureMech_005049 --> ing1_Yeast_extract
    ing2_Glucose["Glucose"]
    CultureMech_005049 --> ing2_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing2_Glucose -.-> CHEBI_17234
    ing3_NaCl["NaCl"]
    CultureMech_005049 --> ing3_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing3_NaCl -.-> CHEBI_26710
    ing4_KNO3["KNO3"]
    CultureMech_005049 --> ing4_KNO3
    CHEBI_63043["CHEBI:63043"]
    ing4_KNO3 -.-> CHEBI_63043
    ing5_Haemin["Haemin"]
    CultureMech_005049 --> ing5_Haemin
    CHEBI_50385["CHEBI:50385"]
    ing5_Haemin -.-> CHEBI_50385

Ingredients (6)

# Ingredient Concentration Ontology Notes
1 Trypticase 17 G_PER_L MICRO:0000175 (source link unavailable)
Trypticase peptone
2 Yeast extract 3 G_PER_L
3 Glucose
C6H12O6 180.156 g/mol
3 G_PER_L CHEBI:17234
glucose
4 NaCl
Cl.Na 58.443 g/mol
3 G_PER_L CHEBI:26710
sodium chloride
5 KNO3
K.NO3 101.102 g/mol
3 G_PER_L CHEBI:63043
potassium nitrate
6 Haemin
C34H32ClFeN4O4 651.952 g/mol
0.003 G_PER_L CHEBI:50385
hemin

Target organisms

No target organisms are recorded.

Provenance

Merged from 3 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 340
2026-02-03T11:18:56.353117 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 340
2026-03-13T06:19:29.780080Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:005049
2026-03-17T06:29:45.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:45.406114+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "CAPNOCYTOPHAGA medium" to "capnocytophaga_medium" for consistent matching
2026-06-05T07:40:22.581426+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:37:34.238542+00:00 primary-term-regrounding-v1.0 Re-grounded wrong primary term id (OAK-verified) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-06-10T07:46:44.637423+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-09-22T00:03:26.686152+00:00 repair_rejected_peptone_groundings.py CORRECTED_REJECTED_PEPTONE_GROUNDING CultureMech #484. /ingredients/0/term/id: Trypticase CHEBI:78018 -> MICRO:0000175 (replace_term). Reviewed identities: https://github.com/CultureBotAI/MediaIngredientMech/tree/24562493919391df4468a4285b7c997960cc8868. Publication resolver: MIM label index 9f09e4fb97fb0e6cbbd6f25baca40b36512adb88. MediaDive source IDs and concentrations preserved.
2026-09-22T00:08:40.917553+00:00 recipe-merger Merged 3 duplicate recipes into canonical record Sources: KOMODO_340_CAPNOCYTOPHAGA_medium, capnocytophaga_medium, medium_340_modified_for_dsm_7271
2026-09-22T00:08:40.917597+00:00 merge_recipes.py MERGED_RECIPES merged 3 source recipe(s) on fingerprint a7f2b87ec5cc7c7aa2630804b8e1bc258ba29c6ced4b3844f184e30ddc74d48c