Overview
- External ontology
- komodo.medium:414 (source link unavailable) — ACIDAMINOCOCCUS FERMENTANS medium
- Applications
-
- Microbial cultivation
- pH range
- {'min': 7.0, 'max': 7.2}
- Notes
- Source: KOMODO ModelSEED | ID: 414 | DSMZ Medium: 414 (mediadive.medium:414) | Aerobic: No
Composition
flowchart LR
CultureMech_005241["acidaminococcus_fermentans_medium"]
ing0_Trypticase_peptone["Trypticase peptone"]
CultureMech_005241 --> ing0_Trypticase_peptone
ing1_Casamino_acids["Casamino acids"]
CultureMech_005241 --> ing1_Casamino_acids
ing2_Yeast_extract["Yeast extract"]
CultureMech_005241 --> ing2_Yeast_extract
ing3_Glucose["Glucose"]
CultureMech_005241 --> ing3_Glucose
CHEBI_17234["CHEBI:17234"]
ing3_Glucose -.-> CHEBI_17234
ing4_Na_glutamate["Na glutamate"]
CultureMech_005241 --> ing4_Na_glutamate
CHEBI_64220["CHEBI:64220"]
ing4_Na_glutamate -.-> CHEBI_64220
ing5_Arginine["Arginine"]
CultureMech_005241 --> ing5_Arginine
CHEBI_29016["CHEBI:29016"]
ing5_Arginine -.-> CHEBI_29016
ing6_Glycine["Glycine"]
CultureMech_005241 --> ing6_Glycine
CHEBI_15428["CHEBI:15428"]
ing6_Glycine -.-> CHEBI_15428
ing7_DL_Tryptophan["DL-Tryptophan"]
CultureMech_005241 --> ing7_DL_Tryptophan
CHEBI_27897["CHEBI:27897"]
ing7_DL_Tryptophan -.-> CHEBI_27897
ing8_KH2PO4["KH2PO4"]
CultureMech_005241 --> ing8_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing8_KH2PO4 -.-> CHEBI_63036
ing9_Tween_80["Tween 80"]
CultureMech_005241 --> ing9_Tween_80
CHEBI_53426["CHEBI:53426"]
ing9_Tween_80 -.-> CHEBI_53426
ing10_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
CultureMech_005241 --> ing10_L_Cysteine_HCl_x_H2O
CHEBI_91248["CHEBI:91248"]
ing10_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
Ingredients (11)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Trypticase peptone | 5 G_PER_L | ||
| 2 | Casamino acids | 10 G_PER_L | ||
| 3 | Yeast extract | 5 G_PER_L | ||
| 4 |
Glucose
C6H12O6 180.156 g/mol
|
5 G_PER_L |
CHEBI:17234
glucose
|
|
| 5 |
Na glutamate
C5H8NO4.Na 169.112 g/mol
|
4 G_PER_L |
CHEBI:64220
monosodium glutamate
|
|
| 6 |
Arginine
C6H14N4O2 174.204 g/mol
|
1 G_PER_L |
CHEBI:29016
arginine
|
|
| 7 |
Glycine
C2H5NO2 75.067 g/mol
|
1 G_PER_L |
CHEBI:15428
glycine
|
|
| 8 |
DL-Tryptophan
C11H12N2O2 204.229 g/mol
|
0.1 G_PER_L |
CHEBI:27897
tryptophan
|
|
| 9 |
KH2PO4
H2O4P.K 136.084 g/mol
|
2 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 10 |
Tween 80
(C2H4O)w.(C2H4O)x.(C2H4O)y.(C2H4O)z.C24H44O6 604.822 g/mol
|
0.5 G_PER_L |
CHEBI:53426
polysorbate 80
|
|
| 11 |
L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
|
0.5 G_PER_L |
CHEBI:91248
L-cysteine hydrochloride hydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_414_ACIDAMINOCOCCUS_FERMENTANS_medium (CultureMech:005241)
- acidaminococcus_fermentans_medium (CultureMech:001523)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:02.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 414 |
| 2026-02-03T11:19:13.855837 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 414 |
| 2026-03-13T06:19:31.275352Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:005241 |
| 2026-03-17T06:30:39.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:47.147391+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "ACIDAMINOCOCCUS FERMENTANS medium" to "acidaminococcus_fermentans_medium" for consistent matching |
| 2026-05-20T06:00:51.698831+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '7.0-7.2' -> {'min': 7.0, 'max': 7.2} |
| 2026-06-05T07:40:23.144883+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:28.001892+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-06-10T07:46:44.835364+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:48.922150+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_414_ACIDAMINOCOCCUS_FERMENTANS_medium, acidaminococcus_fermentans_medium |
| 2026-08-06T03:04:48.922198+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint 6d26e71ada3ccaad7ca4d5d3c318f604d34eca6e94e94b291c01c1c3fa2951b0 |