Overview
- External ontology
- komodo.medium:87a (source link unavailable) — CHLOROFLEXUS AGGREGANS medium
- Applications
-
- Microbial cultivation
- Synonyms
-
- {'name': 'chloroflexus_medium_modified', 'source': 'KOMODO', 'source_id': 'komodo.medium:87', 'original_category': 'bacterial'}
- {'name': 'medium_87a_modified_for_dsm_13941', 'source': 'KOMODO', 'source_id': 'komodo.medium:87a_13941', 'original_category': 'bacterial'}
- pH
- 8.2
- Notes
- Source: KOMODO ModelSEED | ID: 87a | DSMZ Medium: 87a (mediadive.medium:87a) | Aerobic: No
Composition
flowchart LR
CultureMech_006721["chloroflexus_aggregans_medium"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_006721 --> ing0_Yeast_extract
ing1_Glycyl_glycine["Glycyl-glycine"]
CultureMech_006721 --> ing1_Glycyl_glycine
CHEBI_17201["CHEBI:17201"]
ing1_Glycyl_glycine -.-> CHEBI_17201
ing2_Na2HPO4_x_2_H2O["Na2HPO4 x 2 H2O"]
CultureMech_006721 --> ing2_Na2HPO4_x_2_H2O
CHEBI_91258["CHEBI:91258"]
ing2_Na2HPO4_x_2_H2O -.-> CHEBI_91258
ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006721 --> ing3_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
ing4_KNO3["KNO3"]
CultureMech_006721 --> ing4_KNO3
CHEBI_63043["CHEBI:63043"]
ing4_KNO3 -.-> CHEBI_63043
ing5_NaNO3["NaNO3"]
CultureMech_006721 --> ing5_NaNO3
CHEBI_63005["CHEBI:63005"]
ing5_NaNO3 -.-> CHEBI_63005
ing6_NaCl["NaCl"]
CultureMech_006721 --> ing6_NaCl
CHEBI_26710["CHEBI:26710"]
ing6_NaCl -.-> CHEBI_26710
ing7_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006721 --> ing7_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing7_CaCl2_x_2_H2O -.-> CHEBI_86158
ing8_Fe_III__citrate["Fe(III) citrate"]
CultureMech_006721 --> ing8_Fe_III__citrate
CHEBI_144421["CHEBI:144421"]
ing8_Fe_III__citrate -.-> CHEBI_144421
ing9_Nicotinic_acid["Nicotinic acid"]
CultureMech_006721 --> ing9_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing9_Nicotinic_acid -.-> CHEBI_15940
ing10_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
CultureMech_006721 --> ing10_Thiamine_HCl_x_2_H2O
CHEBI_132751["CHEBI:132751"]
ing10_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
ing11_Biotin["Biotin"]
CultureMech_006721 --> ing11_Biotin
CHEBI_15956["CHEBI:15956"]
ing11_Biotin -.-> CHEBI_15956
ing12_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
CultureMech_006721 --> ing12_p_Aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing12_p_Aminobenzoic_acid -.-> CHEBI_30753
ing13_Vitamin_B12["Vitamin B12"]
CultureMech_006721 --> ing13_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing13_Vitamin_B12 -.-> CHEBI_176843
ing14_Calcium_pantothenate["Calcium pantothenate"]
CultureMech_006721 --> ing14_Calcium_pantothenate
CHEBI_31345["CHEBI:31345"]
ing14_Calcium_pantothenate -.-> CHEBI_31345
ing15_Pyridoxine_hydrochloride["Pyridoxine hydrochloride"]
CultureMech_006721 --> ing15_Pyridoxine_hydrochloride
CHEBI_30961["CHEBI:30961"]
ing15_Pyridoxine_hydrochloride -.-> CHEBI_30961
ing16_Folic_acid["Folic acid"]
CultureMech_006721 --> ing16_Folic_acid
CHEBI_27470["CHEBI:27470"]
ing16_Folic_acid -.-> CHEBI_27470
ing17_Na3_EDTA["Na3-EDTA"]
CultureMech_006721 --> ing17_Na3_EDTA
CHEBI_63125["CHEBI:63125"]
ing17_Na3_EDTA -.-> CHEBI_63125
ing18_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_006721 --> ing18_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing18_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing19_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_006721 --> ing19_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing19_MnCl2_x_4_H2O -.-> CHEBI_86368
ing20_H3BO3["H3BO3"]
CultureMech_006721 --> ing20_H3BO3
CHEBI_33118["CHEBI:33118"]
ing20_H3BO3 -.-> CHEBI_33118
ing21_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_006721 --> ing21_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing21_CoCl2_x_6_H2O -.-> CHEBI_53503
ing22_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_006721 --> ing22_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing22_CuCl2_x_2_H2O -.-> CHEBI_86318
ing23_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_006721 --> ing23_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing23_NiCl2_x_6_H2O -.-> CHEBI_34887
ing24_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_006721 --> ing24_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing24_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing25_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_006721 --> ing25_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing25_Na2S_x_9_H2O -.-> CHEBI_76209
Ingredients (26)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 0.952381 G_PER_L | ||
| 2 |
Glycyl-glycine
C4H8N2O3 132.119 g/mol
|
0.952381 G_PER_L |
CHEBI:17201
glycylglycine
|
|
| 3 |
Na2HPO4 x 2 H2O
2H2O.HO4P.2Na 177.988 g/mol
|
0.0952381 G_PER_L |
CHEBI:91258
disodium hydrogenphosphate dihydrate
|
|
| 4 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.0952381 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 5 |
KNO3
K.NO3 101.102 g/mol
|
0.0952381 G_PER_L |
CHEBI:63043
potassium nitrate
|
|
| 6 |
NaNO3
NO3.Na 84.994 g/mol
|
0.47619 G_PER_L |
CHEBI:63005
sodium nitrate
|
|
| 7 |
NaCl
Cl.Na 58.443 g/mol
|
0.0952381 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 8 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.047619 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 9 |
Fe(III) citrate
C6H5FeO7 244.944 g/mol
|
5 G_PER_L |
CHEBI:144421
iron(III) citrate
|
|
| 10 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
1 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 11 |
Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
|
1 G_PER_L |
CHEBI:132751
thiamine hydrochloride dihydrate
|
|
| 12 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.05 G_PER_L |
CHEBI:15956
biotin
|
|
| 13 |
p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.5 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 14 | Vitamin B12 | 0.01 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 15 |
Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.5 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
|
| 16 |
Pyridoxine hydrochloride
C8H11NO3.HCl 205.641 g/mol
|
0.5 G_PER_L |
CHEBI:30961
pyridoxine hydrochloride
|
|
| 17 |
Folic acid
C19H19N7O6 441.404 g/mol
|
0.5 G_PER_L |
CHEBI:27470
folic acid
|
|
| 18 |
Na3-EDTA
C10H13N2O8.3Na 358.19 g/mol
|
2 G_PER_L |
CHEBI:63125
EDTA trisodium salt
|
|
| 19 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.1 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 20 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.03 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 21 |
H3BO3
H3BO3 61.833 g/mol
|
0.3 G_PER_L |
CHEBI:33118
boric acid
|
|
| 22 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.2 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 23 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.01 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 24 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.02 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 25 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.03 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 26 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
30 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 4 source records.
- KOMODO_87_CHLOROFLEXUS_medium_modified (CultureMech:006719)
- KOMODO_87a_CHLOROFLEXUS_AGGREGANS_medium (CultureMech:006721)
- chloroflexus_aggregans_medium (CultureMech:002039)
- medium_87a_modified_for_dsm_13941 (CultureMech:006720)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 87a |
| 2026-02-03T11:18:58.073984 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 87 |
| 2026-03-13T06:19:43.348890Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006721 |
| 2026-03-17T06:29:50.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:01.093104+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "CHLOROFLEXUS AGGREGANS medium" to "chloroflexus_aggregans_medium" for consistent matching |
| 2026-06-05T07:40:27.321233+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 23 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.372697+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:46.189578+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:01.211731+00:00 | recipe-merger | Merged 4 duplicate recipes into canonical record | Sources: KOMODO_87_CHLOROFLEXUS_medium_modified, KOMODO_87a_CHLOROFLEXUS_AGGREGANS_medium, chloroflexus_aggregans_medium, medium_87a_modified_for_dsm_13941 |
| 2026-08-06T03:05:01.211804+00:00 | merge_recipes.py | MERGED_RECIPES | merged 4 source recipe(s) on fingerprint 20766fd1b6cf44f2d475e172feb74e49ef787ae1ba75e2e2d4e9cae2791788b9 |