Overview
- External ontology
- komodo.medium:954 (source link unavailable) — medium FOR H. DOMBROWSKII
- Applications
-
- Microbial cultivation
- pH
- 7.4
- High-metal flag
- True
- Notes
- Source: KOMODO ModelSEED | ID: 954 | DSMZ Medium: 954 (mediadive.medium:954) | Aerobic: No
Composition
flowchart LR
CultureMech_006897["medium_for_h_dombrowskii"]
ing0_Casamino_acids["Casamino acids"]
CultureMech_006897 --> ing0_Casamino_acids
ing1_Yeast_extract["Yeast extract"]
CultureMech_006897 --> ing1_Yeast_extract
ing2_Tris["Tris"]
CultureMech_006897 --> ing2_Tris
CHEBI_9754["CHEBI:9754"]
ing2_Tris -.-> CHEBI_9754
ing3_KCl["KCl"]
CultureMech_006897 --> ing3_KCl
CHEBI_32588["CHEBI:32588"]
ing3_KCl -.-> CHEBI_32588
ing4_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_006897 --> ing4_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing4_MgCl2_x_6_H2O -.-> CHEBI_86345
ing5_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006897 --> ing5_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing5_CaCl2_x_2_H2O -.-> CHEBI_86158
ing6_NaCl["NaCl"]
CultureMech_006897 --> ing6_NaCl
CHEBI_26710["CHEBI:26710"]
ing6_NaCl -.-> CHEBI_26710
ing7_Agar["Agar"]
CultureMech_006897 --> ing7_Agar
CHEBI_2509["CHEBI:2509"]
ing7_Agar -.-> CHEBI_2509
Ingredients (8)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Casamino acids | 5 G_PER_L | ||
| 2 | Yeast extract | 5 G_PER_L | ||
| 3 |
Tris
C4H11NO3 121.136 g/mol
|
12.1 G_PER_L |
CHEBI:9754
tris
|
|
| 4 |
KCl
Cl.K 74.551 g/mol
|
2 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 5 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
20 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 6 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.2 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 7 |
NaCl
Cl.Na 58.443 g/mol
|
200 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 8 | Agar | 20 G_PER_L |
CHEBI:2509
agar
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_954_medium_FOR_H._DOMBROWSKII (CultureMech:006897)
- medium_for_h_dombrowskii (CultureMech:002132)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 954 |
| 2026-02-03T11:19:08.457738 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 954 |
| 2026-03-13T06:19:44.739191Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006897 |
| 2026-03-17T06:30:21.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:02.714585+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "medium FOR H. DOMBROWSKII" to "medium_for_h_dombrowskii" for consistent matching |
| 2026-06-05T07:40:28.144076+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-08T23:19:28.800819+00:00 | chebi-regrounding-v1.0 | Corrected CHEBI ingredient grounding (audit G21/G22) | Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI). |
| 2026-08-06T03:05:02.756099+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_954_medium_FOR_H._DOMBROWSKII, medium_for_h_dombrowskii |
| 2026-08-06T03:05:02.756138+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint 6f67c5d41dc4a2e22032ed74f728eec0e296fd97822c3febbcfd449a3a376c4f |