lamprobacter_roseus_medium (CultureMech:002911)

Overview

External ontology

mediadive.medium:J562 (source link unavailable) — LAMPROBACTER ROSEUS MEDIUM

Applications

Microbial cultivation

Notes

Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=562

Composition

flowchart LR
    CultureMech_002911["lamprobacter_roseus_medium"]
    ing0_KH2PO4["KH2PO4"]
    CultureMech_002911 --> ing0_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing0_KH2PO4 -.-> CHEBI_63036
    ing1_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_002911 --> ing1_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing1_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_002911 --> ing2_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing3_NH4Cl["NH4Cl"]
    CultureMech_002911 --> ing3_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing3_NH4Cl -.-> CHEBI_31206
    ing4_NaCl["NaCl"]
    CultureMech_002911 --> ing4_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing4_NaCl -.-> CHEBI_26710
    ing5_Yeast_extract["Yeast extract"]
    CultureMech_002911 --> ing5_Yeast_extract
    ing6_Sodium_pyruvate["Sodium pyruvate"]
    CultureMech_002911 --> ing6_Sodium_pyruvate
    CHEBI_50144["CHEBI:50144"]
    ing6_Sodium_pyruvate -.-> CHEBI_50144
    ing7_Ferric_citrate["Ferric citrate"]
    CultureMech_002911 --> ing7_Ferric_citrate
    CHEBI_144421["CHEBI:144421"]
    ing7_Ferric_citrate -.-> CHEBI_144421
    ing8_NaHCO3["NaHCO3"]
    CultureMech_002911 --> ing8_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing8_NaHCO3 -.-> CHEBI_32139
    ing9_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_002911 --> ing9_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing9_Na2S_x_9_H2O -.-> CHEBI_76209
    ing10_Na2S2O3_x_5_H2O["Na2S2O3 x 5 H2O"]
    CultureMech_002911 --> ing10_Na2S2O3_x_5_H2O
    CHEBI_32150["CHEBI:32150"]
    ing10_Na2S2O3_x_5_H2O -.-> CHEBI_32150
    ing11_HCl["HCl"]
    CultureMech_002911 --> ing11_HCl
    CHEBI_17883["CHEBI:17883"]
    ing11_HCl -.-> CHEBI_17883
    ing12_ZnCl2["ZnCl2"]
    CultureMech_002911 --> ing12_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing12_ZnCl2 -.-> CHEBI_49976
    ing13_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_002911 --> ing13_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing13_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing14_H3BO3["H3BO3"]
    CultureMech_002911 --> ing14_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing14_H3BO3 -.-> CHEBI_33118
    ing15_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_002911 --> ing15_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing15_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing16_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_002911 --> ing16_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing16_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing17_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_002911 --> ing17_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing17_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing18_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_002911 --> ing18_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing18_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (19)

#	Ingredient	Concentration	Ontology	Notes
1	KH2PO4 H2O4P.K 136.084 g/mol	0.489716 G_PER_L	CHEBI:63036 potassium dihydrogen phosphate	Copied from referenced JCM Medium 561
2	CaCl2 x 2 H2O Ca.2Cl.2H2O 147.014 g/mol	0.146915 G_PER_L	CHEBI:86158 calcium chloride dihydrate	Copied from referenced JCM Medium 561
3	MgSO4 x 7 H2O 7H2O.Mg.O4S 246.473 g/mol	1.95886 G_PER_L	CHEBI:31795 magnesium sulfate heptahydrate	Copied from referenced JCM Medium 561
4	NH4Cl Cl.H4N 53.492 g/mol	0.333007 G_PER_L	CHEBI:31206 ammonium chloride	Copied from referenced JCM Medium 561
5	NaCl Cl.Na 58.443 g/mol	19.5886 G_PER_L	CHEBI:26710 sodium chloride	Copied from referenced JCM Medium 561
6	Yeast extract	0.391773 G_PER_L		Copied from referenced JCM Medium 561
7	Sodium pyruvate C3H3O3.Na 110.044 g/mol	2.9383 G_PER_L	CHEBI:50144 sodium pyruvate	Copied from referenced JCM Medium 561
8	Ferric citrate C6H5FeO7 244.944 g/mol	5 G_PER_L	CHEBI:144421 iron(III) citrate	Copied from referenced JCM Medium 561
9	NaHCO3 CHO3.Na 84.006 g/mol	15 G_PER_L	CHEBI:32139 sodium hydrogencarbonate	Copied from referenced JCM Medium 561
10	Na2S x 9 H2O 9H2O.2Na.S 240.182 g/mol	0.240182 G_PER_L	CHEBI:76209 sodium sulfide nonahydrate	Copied from referenced JCM Medium 561
11	Na2S2O3 x 5 H2O 5H2O.2Na.O3S2 248.186 g/mol	1.48912 G_PER_L	CHEBI:32150 sodium thiosulfate pentahydrate	Copied from referenced JCM Medium 561
12	HCl HCl 36.461 g/mol	1 G_PER_L	CHEBI:17883 hydrogen chloride	Copied from referenced JCM Medium 561
13	ZnCl2 2Cl.Zn 136.296 g/mol	0.0699301 G_PER_L	CHEBI:49976 zinc dichloride	Copied from referenced JCM Medium 561
14	MnCl2 x 4 H2O Cl2Mn.4H2O 197.904 g/mol	0.0999001 G_PER_L	CHEBI:86368 manganese(II) chloride tetrahydrate	Copied from referenced JCM Medium 561
15	H3BO3 H3BO3 61.833 g/mol	0.0599401 G_PER_L	CHEBI:33118 boric acid	Copied from referenced JCM Medium 561
16	CoCl2 x 6 H2O 2Cl.Co.6H2O 237.929 g/mol	0.1998 G_PER_L	CHEBI:53503 cobalt chloride hexahydrate	Copied from referenced JCM Medium 561
17	CuCl2 x 2 H2O Cl2Cu.2H2O 170.482 g/mol	0.01998 G_PER_L	CHEBI:86318 copper(II) chloride dihydrate	Copied from referenced JCM Medium 561
18	NiCl2 x 6 H2O Cl2Ni 129.599 g/mol	0.01998 G_PER_L	CHEBI:34887 nickel dichloride	Copied from referenced JCM Medium 561
19	Na2MoO4 x 2 H2O 2H2O.MoO4.2Na 241.946 g/mol	0.03996 G_PER_L	CHEBI:75213 sodium molybdate dihydrate	Copied from referenced JCM Medium 561

Preparation

Use Medium No. 561 supplemented with 1.0 ml/L vitamin B12 solution (2 mg/100 ml).

Target organisms

No target organisms are recorded.

Provenance

Timestamp	Curator	Action	Notes
2026-01-26T17:53:16.942835Z	mediadive-import	Imported from MediaDive	Source: JCM, ID: J562
2026-02-03T11:26:55.328231	quality-tagger-v1.0	Added data quality flag	Marked as incomplete_composition due to placeholder ingredients
2026-03-13T06:19:16.511762Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:002911
2026-03-17T19:45:30.073511+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "LAMPROBACTER ROSEUS MEDIUM" to "lamprobacter_roseus_medium" for consistent matching
2026-04-04T18:49:19.810559	copy_referenced_compositions	RESOLVED_REFERENCE	Resolved reference by copying from thiorhodococcus_bheemlicum_medium (CultureMech:002910)
2026-05-16T08:57:36.805756+00:00	migrate_data_quality_flags.py	MIGRATED_DATA_QUALITY_FLAGS	dict(2 keys) -> list(1 entries)
2026-06-05T07:41:10.760941+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 18 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:00.481293+00:00	primary-term-label-canonicalization-v1.0	Canonicalized primary term label to OBO canonical (OAK)	3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.