All families / PF01169
PF01169: GDT1
Divalent cation/proton antiporter GDT1
- Curation status
- SEEDED
- Seed status
- EX DUF
- Characterization
- UNSCORED
Grounding
PF01169: Divalent cation/proton antiporter GDT1
IPR001727: integrated entry for Divalent cation/proton antiporter GDT1
Source description
This entry, previously known as UPF0016, represents the budding yeast Divalent cation/proton antiporter GDT1 and its homologue, the human TMEM165 that are functionally related and form a new group of Golgi-localised cation/Ca(2+) exchangers. Budding yeast GDT1 is a Golgi-localised calcium transporter required for stress-induced calcium signalling and protein glycosylation [InterPro reference PUB00079030]. TMEM165, also a Golgi protein, transports Ca2+ and Mn2+, which are both required for proper protein glycosylation in cells [InterPro reference PUB00079031,InterPro reference PUB00152812]. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions.
Evidence and references
- InterPro entry and its literature references. PUB identifiers are internal InterPro references, not PubMed identifiers. Unresolved citations link to the originating entry.
- Frozen description source: InterPro/Pfam API
Source descriptions and links are provenance, not independent functional validation.
Evidence counts: not scored.
Curated functional assertions
No curated functional assertions supplied.
Protein sequence examples
9 verified sequence examples. FASTA
| UniProt | Protein / organism | Sequence | Provenance |
|---|---|---|---|
| P38301 | Divalent cation/proton antiporter GDT1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | 280 aa; version 1 UniProt 2026_03 | UNIPROT FETCH |
| P52875 | Putative divalent cation/proton antiporter TMEM165 Mus musculus | 323 aa; version 2 UniProt 2026_03 | UNIPROT FETCH2 sibling references |
| Q4V899 | Putative divalent cation/proton antiporter TMEM165 Rattus norvegicus | 323 aa; version 1 UniProt 2026_03 | UNIPROT FETCH1 sibling references |
| Q93Y38 | GDT1-like protein 3 Arabidopsis thaliana | 293 aa; version 1 UniProt 2026_03 | UNIPROT FETCH |
| Q94AX5 | Protein PAM71, chloroplastic Arabidopsis thaliana | 370 aa; version 2 UniProt 2026_03 | PTM REGISTRY MIRROR10 sibling references
|
| Q9C6M1 | GDT1-like protein 4 Arabidopsis thaliana | 230 aa; version 1 UniProt 2026_03 | UNIPROT FETCH |
| Q9HC07 | Putative divalent cation/proton antiporter TMEM165 Homo sapiens | 324 aa; version 1 UniProt 2026_03 | UNIPROT FETCH |
| Q9SX28 | GDT1-like protein 5 Arabidopsis thaliana | 228 aa; version 1 UniProt 2026_03 | UNIPROT FETCH2 sibling references |
| Q9T0H9 | Protein PAM71-homolog, chloroplastic Arabidopsis thaliana | 359 aa; version 2 UniProt 2026_03 | UNIPROT FETCH |
Pfam membership is not functional evidence. Whole-protein sequences do not establish domain boundaries. A coverage gap here is not absence from UniProt.
Sequences and metadata: UniProt Consortium, CC BY 4.0.
Domain matches
No residue-level domain match evidence is available in this build. Structure and AlphaFold counters do not supply coordinates or establish function.
Snapshot counters
- proteins
- 13,378
- matches
- 25,173
- proteomes
- 9,440
- taxa
- 17,433
- structures
- 0
- alphafold models
- 9,762
- domain architectures
- 121
Classification basis
pfam previous unknown name
No scoring reasons supplied.
Related Mech records
This family joined the worklist after the frozen cross-Mech scan, so other Mechs were not searched for it. Missing links here are not evidence that other Mechs lack it; rows shown come from mentions of a former DUF/UPF name.
No cross-Mech examples are present in the supplied snapshot.
Curation history and reviews
No retained curation events supplied.
No retained review supplied.
Record source
Status and evidence
- Seed status
- A name-based classification of frozen InterPro/Pfam metadata. UNKNOWN CANDIDATE means the metadata explicitly says the function is unknown. KNOWN HISTORICAL DUF means a DUF name matched without that wording; this heuristic is not proof of a known function and does not establish experimental characterization. EX DUF means Pfam renamed the family away from a DUF/UPF name, as recorded in Pfam's previous identifiers; a rename usually follows published work on some members but is naming history, not proof of function for every member. Some EX DUF families' current names or descriptions still say the function is unknown; their classification basis lists this, and scoring does not treat them as characterized. FALSE POSITIVE TEXT HIT means the naming rules did not match.
- Characterization
- A separate evidence-scoring result. UNSCORED means no score has been calculated; it is not evidence that the family lacks a known function. Missing scores are not negative evidence. PARTIALLY CHARACTERIZED has partial support; KNOWN HISTORICAL DUF can inherit the seed label or reflect a known-function signal. Neither label implies experimental validation.
- Evidence counts
- Source-specific signals, not unique proteins, publications, or confidence scores. Known counts Rhea reactions and experimentally supported GO molecular-function annotations. Partial counts functional/domain assignments. Context counts structural, environmental, orthology, interaction and neighborhood signals; context alone does not assign function. Repeated annotations may not be independent.
- Curation status
- Reported separately from seed classification and characterization. SNAPSHOT ONLY means no curated metadata was supplied for this build. SEEDED denotes a source-derived record, not an expert-reviewed functional claim.
- Missing counts
- Not available means the source did not supply that counter. A zero is a reported count. Not scored means evidence counts are unavailable.