All families / PF05670
PF05670: NFACT-R_1
NFACT protein RNA binding domain
- Curation status
- SEEDED
- Seed status
- EX DUF
- Characterization
- UNSCORED
Grounding
PF05670: NFACT protein RNA binding domain
IPR008532: integrated entry for NFACT protein RNA binding domain
Source description
This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 (UniProtKB protein) where the N-terminal region is involved in this activity [InterPro reference PUB00011315]. It is an RNA binding domain of the NFACT (NEMF, FbpA, Caliban, and Tae2) proteins. This NFACT-R family is found in two eukaryotic gene contexts: fused to the NFACT-N and NFACT-C domains in the NFACT protein involved in the ribosomal quality control pathway which contributes to CAT-tailing and as a standalone domain [InterPro reference PUB00091027]. Additionally this domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Evidence and references
- InterPro entry and its literature references. PUB identifiers are internal InterPro references, not PubMed identifiers. Unresolved citations link to the originating entry.
- Frozen description source: InterPro/Pfam API
Source descriptions and links are provenance, not independent functional validation.
Evidence counts: not scored.
Curated functional assertions
No curated functional assertions supplied.
Protein sequence examples
8 verified sequence examples. FASTA
| UniProt | Protein / organism | Sequence | Provenance |
|---|---|---|---|
| O34693 | Rqc2 homolog RqcH Bacillus subtilis (strain 168) | 570 aa; version 2 UniProt 2026_03 | PTM REGISTRY MIRROR |
| O60524 | Ribosome quality control complex subunit NEMF Homo sapiens | 1076 aa; version 4 UniProt 2026_03 | PTM REGISTRY MIRROR9 sibling references |
| Q12532 | Ribosome quality control complex subunit 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | 1038 aa; version 1 UniProt 2026_03 | UNIPROT FETCH10 sibling references
|
| Q59020 | Archaeal Rqc2 homolog aRqcH Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) | 671 aa; version 1 UniProt 2026_03 | PTM REGISTRY MIRROR9 sibling references
|
| Q78PG9 | Coiled-coil domain-containing protein 25 Mus musculus | 208 aa; version 1 UniProt 2026_03 | UNIPROT FETCH2 sibling references |
| Q86WR0 | Coiled-coil domain-containing protein 25 Homo sapiens | 208 aa; version 2 UniProt 2026_03 | UNIPROT FETCH2 sibling references |
| Q8CCP0 | Ribosome quality control complex subunit NEMF Mus musculus | 1064 aa; version 2 UniProt 2026_03 | UNIPROT FETCH |
| Q9VBX1 | Ribosome quality control complex subunit NEMF homolog Drosophila melanogaster | 992 aa; version 2 UniProt 2026_03 | UNIPROT FETCH9 sibling references |
Pfam membership is not functional evidence. Whole-protein sequences do not establish domain boundaries. A coverage gap here is not absence from UniProt.
Sequences and metadata: UniProt Consortium, CC BY 4.0.
Domain matches
No residue-level domain match evidence is available in this build. Structure and AlphaFold counters do not supply coordinates or establish function.
Snapshot counters
- proteins
- 13,115
- matches
- 13,157
- proteomes
- 8,466
- taxa
- 17,368
- structures
- 20
- alphafold models
- 10,207
- domain architectures
- 128
Classification basis
pfam previous unknown name
No scoring reasons supplied.
Related Mech records
This family joined the worklist after the frozen cross-Mech scan, so other Mechs were not searched for it. Missing links here are not evidence that other Mechs lack it; rows shown come from mentions of a former DUF/UPF name.
No cross-Mech examples are present in the supplied snapshot.
Curation history and reviews
No retained curation events supplied.
No retained review supplied.
Record source
Status and evidence
- Seed status
- A name-based classification of frozen InterPro/Pfam metadata. UNKNOWN CANDIDATE means the metadata explicitly says the function is unknown. KNOWN HISTORICAL DUF means a DUF name matched without that wording; this heuristic is not proof of a known function and does not establish experimental characterization. EX DUF means Pfam renamed the family away from a DUF/UPF name, as recorded in Pfam's previous identifiers; a rename usually follows published work on some members but is naming history, not proof of function for every member. Some EX DUF families' current names or descriptions still say the function is unknown; their classification basis lists this, and scoring does not treat them as characterized. FALSE POSITIVE TEXT HIT means the naming rules did not match.
- Characterization
- A separate evidence-scoring result. UNSCORED means no score has been calculated; it is not evidence that the family lacks a known function. Missing scores are not negative evidence. PARTIALLY CHARACTERIZED has partial support; KNOWN HISTORICAL DUF can inherit the seed label or reflect a known-function signal. Neither label implies experimental validation.
- Evidence counts
- Source-specific signals, not unique proteins, publications, or confidence scores. Known counts Rhea reactions and experimentally supported GO molecular-function annotations. Partial counts functional/domain assignments. Context counts structural, environmental, orthology, interaction and neighborhood signals; context alone does not assign function. Repeated annotations may not be independent.
- Curation status
- Reported separately from seed classification and characterization. SNAPSHOT ONLY means no curated metadata was supplied for this build. SEEDED denotes a source-derived record, not an expert-reviewed functional claim.
- Missing counts
- Not available means the source did not supply that counter. A zero is a reported count. Not scored means evidence counts are unavailable.