All families / PF06294
PF06294: CH_2
CH-like domain in sperm protein
- Curation status
- SEEDED
- Seed status
- EX DUF
- Characterization
- UNSCORED
Grounding
PF06294: CH-like domain in sperm protein
IPR010441: integrated entry for CH-like domain in sperm protein
Source description
Spef is a region of sperm flagellar proteins. It probably exerts a role in spermatogenesis in that the protein is expressed predominantly in adult tissue. It is present in the tails of developing and epididymal sperm internal to the fibrous sheath and around the dense outer fibres of the sperm flagellum [InterPro reference PUB00044949]. The amino-terminal domain (residues 1-110) shows a possible calponin homology (CH) domain; however Spef does not bind actin directly under in vitro conditions, so the function of the amino-terminal calponin-like domain is unclear [InterPro reference PUB00044949]. Transcription aberrations leading to a truncated protein result in immotile sperm [InterPro reference PUB00044950].
Evidence and references
- InterPro entry and its literature references. PUB identifiers are internal InterPro references, not PubMed identifiers. Unresolved citations link to the originating entry.
- Frozen description source: InterPro/Pfam API
Source descriptions and links are provenance, not independent functional validation.
Evidence counts: not scored.
Curated functional assertions
No curated functional assertions supplied.
Protein sequence examples
6 verified sequence examples. FASTA
| UniProt | Protein / organism | Sequence | Provenance |
|---|---|---|---|
| Q8C9J3 | Sperm flagella and cilia-associated protein 2 Mus musculus | 1724 aa; version 3 UniProt 2026_03 | UNIPROT FETCH |
| Q8K3V1 | Spermatogenesis-associated protein 4 Mus musculus | 295 aa; version 1 UniProt 2026_03 | UNIPROT FETCH1 sibling references |
| Q8NEY3 | Spermatogenesis-associated protein 4 Homo sapiens | 305 aa; version 1 UniProt 2026_03 | UNIPROT FETCH1 sibling references |
| Q99JL1 | Sperm flagella and cilia-associated protein 1 Mus musculus | 234 aa; version 1 UniProt 2026_03 | UNIPROT FETCH |
| Q9C093 | Sperm flagella and cilia-associated protein 2 Homo sapiens | 1822 aa; version 2 UniProt 2026_03 | UNIPROT FETCH |
| Q9Y4P9 | Sperm flagella and cilia-associated protein 1 Homo sapiens | 236 aa; version 3 UniProt 2026_03 | PTM REGISTRY MIRROR10 sibling references
|
Pfam membership is not functional evidence. Whole-protein sequences do not establish domain boundaries. A coverage gap here is not absence from UniProt.
Sequences and metadata: UniProt Consortium, CC BY 4.0.
Domain matches
No residue-level domain match evidence is available in this build. Structure and AlphaFold counters do not supply coordinates or establish function.
Snapshot counters
- proteins
- 3,966
- matches
- 3,973
- proteomes
- 1,198
- taxa
- 3,948
- structures
- 8
- alphafold models
- 2,630
- domain architectures
- 80
Classification basis
pfam previous unknown name
No scoring reasons supplied.
Related Mech records
This family joined the worklist after the frozen cross-Mech scan, so other Mechs were not searched for it. Missing links here are not evidence that other Mechs lack it; rows shown come from mentions of a former DUF/UPF name.
No cross-Mech examples are present in the supplied snapshot.
Curation history and reviews
No retained curation events supplied.
No retained review supplied.
Record source
Status and evidence
- Seed status
- A name-based classification of frozen InterPro/Pfam metadata. UNKNOWN CANDIDATE means the metadata explicitly says the function is unknown. KNOWN HISTORICAL DUF means a DUF name matched without that wording; this heuristic is not proof of a known function and does not establish experimental characterization. EX DUF means Pfam renamed the family away from a DUF/UPF name, as recorded in Pfam's previous identifiers; a rename usually follows published work on some members but is naming history, not proof of function for every member. Some EX DUF families' current names or descriptions still say the function is unknown; their classification basis lists this, and scoring does not treat them as characterized. FALSE POSITIVE TEXT HIT means the naming rules did not match.
- Characterization
- A separate evidence-scoring result. UNSCORED means no score has been calculated; it is not evidence that the family lacks a known function. Missing scores are not negative evidence. PARTIALLY CHARACTERIZED has partial support; KNOWN HISTORICAL DUF can inherit the seed label or reflect a known-function signal. Neither label implies experimental validation.
- Evidence counts
- Source-specific signals, not unique proteins, publications, or confidence scores. Known counts Rhea reactions and experimentally supported GO molecular-function annotations. Partial counts functional/domain assignments. Context counts structural, environmental, orthology, interaction and neighborhood signals; context alone does not assign function. Repeated annotations may not be independent.
- Curation status
- Reported separately from seed classification and characterization. SNAPSHOT ONLY means no curated metadata was supplied for this build. SEEDED denotes a source-derived record, not an expert-reviewed functional claim.
- Missing counts
- Not available means the source did not supply that counter. A zero is a reported count. Not scored means evidence counts are unavailable.