All families / PF11980
PF11980: DUF3481
C-terminal domain of neuropilin glycoprotein
- Curation status
- SEEDED
- Seed status
- KNOWN HISTORICAL DUF
- Characterization
- UNSCORED
Grounding
PF11980: C-terminal domain of neuropilin glycoprotein
IPR022579: integrated entry for C-terminal domain of neuropilin glycoprotein
Source description
This domain is found in eukaryotes at the C-terminus of neuropilins. It represents the transmembrane region of these transmembrane glycoproteins, that are predominantly co-receptors for another class of proteins known as semaphorins. The domain is found associated with PF00754 (Pfam entry), PF00431 (Pfam entry), PF00629 (Pfam entry).
Evidence and references
Source descriptions and links are provenance, not independent functional validation.
Evidence counts: not scored.
Curated functional assertions
No curated functional assertions supplied.
Protein sequence examples
3 verified sequence examples. FASTA
| UniProt | Protein / organism | Sequence | Provenance |
|---|---|---|---|
| O14786 | Neuropilin-1 Homo sapiens | 923 aa; version 3 UniProt 2026_03 | PTM REGISTRY MIRROR |
| O60462 | Neuropilin-2 Homo sapiens | 931 aa; version 3 UniProt 2026_03 | UNIPROT FETCH |
| Q9QWJ9 | Neuropilin-1 Rattus norvegicus | 922 aa; version 1 UniProt 2026_03 | UNIPROT FETCH1 sibling references |
Pfam membership is not functional evidence. Whole-protein sequences do not establish domain boundaries. A coverage gap here is not absence from UniProt.
Sequences and metadata: UniProt Consortium, CC BY 4.0.
Domain matches
No residue-level domain match evidence is available in this build. Structure and AlphaFold counters do not supply coordinates or establish function.
Snapshot counters
- proteins
- 2,935
- matches
- 2,935
- proteomes
- 697
- taxa
- 2,141
- structures
- 0
- alphafold models
- 2,628
- domain architectures
- 28
Classification basis
short name matches duf
No scoring reasons supplied.
Related Mech records
| Family | Mech | Record | Protein | Link basis |
|---|---|---|---|---|
| DUF3481 (PF11980) | ProteinTraitsMech | Neuropilin, C-terminal | trait identifier | |
| DUF3481 (PF11980) | ProteinTraitsMech | CUB domain | O60462 Neuropilin-2 | canonical example family classification |
| DUF3481 (PF11980) | ProteinTraitsMech | C-terminal domain of neuropilin glycoprotein | O14786 Neuropilin-1 | canonical example family classification |
| DUF3481 (PF11980) | ProteinTraitsMech | C-terminal domain of neuropilin glycoprotein | O60462 Neuropilin-2 | canonical example family classification |
| DUF3481 (PF11980) | ProteinTraitsMech | C-terminal domain of neuropilin glycoprotein | Q9QWJ9 Neuropilin-1 | canonical example family classification |
| DUF3481 (PF11980) | ProteinTraitsMech | C-terminal domain of neuropilin glycoprotein | trait identifier | |
| DUF3481 (PF11980) | ProteinTraitsMech | Coagulation factors 5/8 type C domain (FA58C) signature 1 | O60462 Neuropilin-2 | canonical example family classification |
| DUF3481 (PF11980) | ProteinTraitsMech | Coagulation factors 5/8 type C domain (FA58C) signature 2 | O60462 Neuropilin-2 | canonical example family classification |
| DUF3481 (PF11980) | ProteinTraitsMech | MAM domain signature | O14786 Neuropilin-1 | canonical example family classification |
Curation history and reviews
No retained curation events supplied.
No retained review supplied.
Record source
Status and evidence
- Seed status
- A name-based classification of frozen InterPro/Pfam metadata. UNKNOWN CANDIDATE means the metadata explicitly says the function is unknown. KNOWN HISTORICAL DUF means a DUF name matched without that wording; this heuristic is not proof of a known function and does not establish experimental characterization. EX DUF means Pfam renamed the family away from a DUF/UPF name, as recorded in Pfam's previous identifiers; a rename usually follows published work on some members but is naming history, not proof of function for every member. Some EX DUF families' current names or descriptions still say the function is unknown; their classification basis lists this, and scoring does not treat them as characterized. FALSE POSITIVE TEXT HIT means the naming rules did not match.
- Characterization
- A separate evidence-scoring result. UNSCORED means no score has been calculated; it is not evidence that the family lacks a known function. Missing scores are not negative evidence. PARTIALLY CHARACTERIZED has partial support; KNOWN HISTORICAL DUF can inherit the seed label or reflect a known-function signal. Neither label implies experimental validation.
- Evidence counts
- Source-specific signals, not unique proteins, publications, or confidence scores. Known counts Rhea reactions and experimentally supported GO molecular-function annotations. Partial counts functional/domain assignments. Context counts structural, environmental, orthology, interaction and neighborhood signals; context alone does not assign function. Repeated annotations may not be independent.
- Curation status
- Reported separately from seed classification and characterization. SNAPSHOT ONLY means no curated metadata was supplied for this build. SEEDED denotes a source-derived record, not an expert-reviewed functional claim.
- Missing counts
- Not available means the source did not supply that counter. A zero is a reported count. Not scored means evidence counts are unavailable.