All families / PF19755
PF19755: DUF6242
Domain of unknown function (DUF6242) N-terminal domain
- Curation status
- SEEDED
- Seed status
- UNKNOWN CANDIDATE
- Characterization
- UNSCORED
Grounding
PF19755: Domain of unknown function (DUF6242) N-terminal domain
IPR046209: integrated entry for Domain of unknown function (DUF6242) N-terminal domain
Source description
This entry represents the N-terminal beta sandwich domain found in the DUF6242 family of proteins. The C-terminal domain has a beta propeller structure.
Evidence and references
Source descriptions and links are provenance, not independent functional validation.
Evidence counts: not scored.
Curated functional assertions
No curated functional assertions supplied.
Protein sequence examples
2 verified sequence examples. FASTA
| UniProt | Protein / organism | Sequence | Provenance |
|---|---|---|---|
| B2RHH0 | Outer membrane protein assembly factor BamI Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) | 387 aa; version 1 UniProt 2026_03 | UNIPROT FETCH2 sibling references |
| Q8A1D9 | Outer membrane protein assembly factor BamI Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) | 493 aa; version 1 UniProt 2026_03 | UNIPROT FETCH2 sibling references |
Pfam membership is not functional evidence. Whole-protein sequences do not establish domain boundaries. A coverage gap here is not absence from UniProt.
Sequences and metadata: UniProt Consortium, CC BY 4.0.
Domain matches
No residue-level domain match evidence is available in this build. Structure and AlphaFold counters do not supply coordinates or establish function.
Snapshot counters
- proteins
- 226
- matches
- 226
- proteomes
- 221
- taxa
- 357
- structures
- 3
- alphafold models
- 160
- domain architectures
- 5
Classification basis
short name matches duf; name says unknown function; domain of unknown function
No scoring reasons supplied.
Related Mech records
| Family | Mech | Record | Protein | Link basis |
|---|---|---|---|---|
| DUF6242 (PF19755) | ProteinTraitsMech | Outer membrane protein assembly factor BamI, N-terminal domain | trait identifier | |
| DUF6242 (PF19755) | ProteinTraitsMech | Domain of unknown function (DUF6242) N-terminal domain | B2RHH0 Outer membrane protein assembly factor BamI | canonical example family classification |
| DUF6242 (PF19755) | ProteinTraitsMech | Domain of unknown function (DUF6242) N-terminal domain | Q8A1D9 Outer membrane protein assembly factor BamI | canonical example family classification |
| DUF6242 (PF19755) | ProteinTraitsMech | Domain of unknown function (DUF6242) N-terminal domain | trait identifier | |
| DUF6242 (PF19755) | ProteinTraitsMech | DUF6242 beta propeller domain | B2RHH0 Outer membrane protein assembly factor BamI | canonical example family classification |
| DUF6242 (PF19755) | ProteinTraitsMech | DUF6242 beta propeller domain | Q8A1D9 Outer membrane protein assembly factor BamI | canonical example family classification |
Curation history and reviews
No retained curation events supplied.
No retained review supplied.
Record source
Status and evidence
- Seed status
- A name-based classification of frozen InterPro/Pfam metadata. UNKNOWN CANDIDATE means the metadata explicitly says the function is unknown. KNOWN HISTORICAL DUF means a DUF name matched without that wording; this heuristic is not proof of a known function and does not establish experimental characterization. EX DUF means Pfam renamed the family away from a DUF/UPF name, as recorded in Pfam's previous identifiers; a rename usually follows published work on some members but is naming history, not proof of function for every member. Some EX DUF families' current names or descriptions still say the function is unknown; their classification basis lists this, and scoring does not treat them as characterized. FALSE POSITIVE TEXT HIT means the naming rules did not match.
- Characterization
- A separate evidence-scoring result. UNSCORED means no score has been calculated; it is not evidence that the family lacks a known function. Missing scores are not negative evidence. PARTIALLY CHARACTERIZED has partial support; KNOWN HISTORICAL DUF can inherit the seed label or reflect a known-function signal. Neither label implies experimental validation.
- Evidence counts
- Source-specific signals, not unique proteins, publications, or confidence scores. Known counts Rhea reactions and experimentally supported GO molecular-function annotations. Partial counts functional/domain assignments. Context counts structural, environmental, orthology, interaction and neighborhood signals; context alone does not assign function. Repeated annotations may not be independent.
- Curation status
- Reported separately from seed classification and characterization. SNAPSHOT ONLY means no curated metadata was supplied for this build. SEEDED denotes a source-derived record, not an expert-reviewed functional claim.
- Missing counts
- Not available means the source did not supply that counter. A zero is a reported count. Not scored means evidence counts are unavailable.