Oral-cavity-and-airways

habitatmech:BACDIVE.3974b3f169 ·OTHER ·UNGROUNDED REVIEWED

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
Source	Label / path	Assertions	Unit
BACDIVE	Oral-cavity-and-airways	2102	STRAIN

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
Taxon	Source	Rank	Pool
Actinomyces viscosus `NCBITaxon:1656`	BACDIVE	1	881
Bordetella pertussis `NCBITaxon:520`	BACDIVE	2	881
Schaalia odontolytica `NCBITaxon:1660`	BACDIVE	3	881
Pseudomonas aeruginosa `NCBITaxon:287`	BACDIVE	4	881
Streptococcus anginosus `NCBITaxon:1328`	BACDIVE	5	881
Actinomyces naeslundii `NCBITaxon:1655`	BACDIVE	6	881
Haemophilus influenzae `NCBITaxon:727`	BACDIVE	7	881
Klebsiella pneumoniae `NCBITaxon:573`	BACDIVE	8	881
Streptococcus pneumoniae `NCBITaxon:1313`	BACDIVE	9	881
Streptococcus sanguinis `NCBITaxon:1305`	BACDIVE	10	881
Corynebacterium diphtheriae `NCBITaxon:1717`	BACDIVE	11	881
Streptococcus oralis `NCBITaxon:1303`	BACDIVE	12	881
Ornithobacterium rhinotracheale `NCBITaxon:28251`	BACDIVE	13	881
Bacteria `NCBITaxon:2`	BACDIVE	14	881
Bordetella parapertussis `NCBITaxon:519`	BACDIVE	15	881
Actinomyces graevenitzii `NCBITaxon:55565`	BACDIVE	16	881
Elizabethkingia meningoseptica `NCBITaxon:238`	BACDIVE	17	881
Aggregatibacter aphrophilus `NCBITaxon:732`	BACDIVE	18	881
Streptococcus gordonii `NCBITaxon:1302`	BACDIVE	19	881
Streptococcus sp. `NCBITaxon:1306`	BACDIVE	20	881
Streptococcus pyogenes `NCBITaxon:1314`	BACDIVE	21	881
Kingella denitrificans `NCBITaxon:502`	BACDIVE	22	881
Stenotrophomonas sp. `NCBITaxon:69392`	BACDIVE	23	881
Histophilus somni `NCBITaxon:731`	BACDIVE	24	881
Staphylococcus aureus `NCBITaxon:1280`	BACDIVE	25	881

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

CONFIRM_UNGROUNDED 2026-08-14 · claude-opus-5
Confirmed UNGROUNDED: no ontology term fits this concept. Cohort review (subset/disjoint mapping screen): a composite of two sites. UBERON:0001005 'respiratory airway' covers only the airways half and drops the oral cavity, and it is also the correct target for the separate 'Airways' source — adopting it here would merge the two. No single term covers mouth plus airway; the respiratory-tract terms exclude the oral cavity. (source concept habitatmech:BACDIVE.3974b3f169)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.