Habitats that real data is attached to, that a curator has examined, and that no term in ENVO, UBERON, FOODON, BTO or PO fits. These are what HabitatMech is asking the ontology community for.
Each was individually examined against its source path and candidate terms — these are not the bulk-swept remainder. The largest is the single biggest ungrounded concept in the corpus.
| Habitat | Upstream assertions | Sources | Why no term fits |
|---|---|---|---|
| Mammals: Human | 52129 | BACDIVE, GOLD | Humans as host, the single largest ungrounded concept at 40432 GOLD organisms. No human-associated environment term exists in ENVO. Deliberately not grounded to animal-associated environment: every host clade would then |
| Environmental | 18454 | BACDIVE | Term-request re-check (#12), after ENVO:01001000 showed these claims were never machine-rechecked: 'Environmental' is the counterpart of BacDive's Host and Engineered bins, so ENVO:01000951 'natural environment' looks li |
| Mammals | 6104 | GOLD | Mammals as host. Parented to animal-associated environment; not grounded there because every host clade would merge onto one record. ENVO term request. |
| host_animal_endotherm | 5130 | MADIN | Category override (#57): a minted identifier gives infer_category nothing to read — no ontology term, no GOLD path — so every Madin habitat named in the BacDive vocabulary fell to OTHER. This is the single largest Madin |
| Bacteria | 3017 | GOLD | GOLD's Host-associated > Microbial > Bacteria: bacteria acting as host for another microbe. No environment term exists for a microbial host; ENVO's organism-associated terms cover plants and animals only. ENVO term reque |
| Oral-cavity-and-airways | 2102 | BACDIVE | Cohort review (subset/disjoint mapping screen): a composite of two sites. UBERON:0001005 'respiratory airway' covers only the airways half and drops the oral cavity, and it is also the correct target for the separate 'Ai |
| Birds | 1848 | GOLD | Birds as host. Parented to animal-associated environment; not grounded there because every host clade would merge onto one record. ENVO term request. |
| Arthropoda: Insects | 1833 | GOLD | Insects as host. Parented to animal-associated environment; not grounded there because every host clade would merge onto one record. ENVO term request. |
| Fish | 1350 | GOLD | Fish as host. Parented to animal-associated environment; not grounded there because every host clade would merge onto one record. ENVO term request. |
| Environmental | 1285 | GOLD | Term-request re-check (#12), after ENVO:01001000 showed these claims were never machine-rechecked: GOLD's top-level Environmental bin, same near-miss as BacDive's and for a sharper reason: GOLD files Terrestrial > Soil > |
| Rock core/Sediment | 1245 | GOLD | Deep subsurface rock core and sediment sampled together. GOLD conflates two materials in one node, so no single term is honest; parented to sediment as the nearer of the two. |
| host_animal_ectotherm | 999 | MADIN | Category override (#57): a minted identifier gives infer_category nothing to read — no ontology term, no GOLD path — so every Madin habitat named in the BacDive vocabulary fell to OTHER. A cold-blooded animal host is HOS |
| Tree | 872 | BACDIVE | A tree as host. No tree-associated environment term exists; BTO:0005516 wood is the material, not the living host. Parented to plant-associated environment as the nearest broader term. ENVO term request. |
| Mollusca | 784 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Fungi | 635 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Invertebrates | 621 | GOLD | Invertebrates as host. Parented to animal-associated environment; not grounded there because every host clade would merge onto one record. ENVO term request. |
| Bovinae-Cow,-Cattle | 619 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Arthropoda: Crustaceans | 598 | GOLD | Crustaceans as host. ENVO:01001176 environment associated with an aquatic invertebrate is close but excludes terrestrial crustaceans, so it is not a safe identity either. ENVO term request. |
| Invertebrates-Other | 596 | BACDIVE | Cohort review: NCIT:C17649 'Other' is a bucket with no meaning of its own, and it absorbs 'Rodentia-Other' too — one record labelled 'Other' holding rodents and invertebrates. The invertebrate-associated environment term |
| Arthropoda: Myriapoda | 569 | GOLD | Myriapods as host. Parented to animal-associated environment; not grounded there because every host clade would merge onto one record. ENVO term request. |
| Suidae-Pig,Swine | 521 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Contamination | 474 | BACDIVE | Risky-grounding review (#12): the seeder made ENVO:00002204 'anthropogenic contamination feature' the identity of BacDive's 'Contamination' category — the highest-volume risky grounding at 474 strains. The term asserts t |
| Microbial | 465 | GOLD | GOLD's Host-associated > Microbial: a microorganism as host. Same gap as the Bacteria child; ENVO has no microbial-host environment term. |
| Caprinae-Sheep/Goat | 412 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Algae | 394 | GOLD | Non-habitat screen (#12): 'Host-associated > Algae' was grounded EXACT to FOODON:03411301 'algae', which FOODON defines as 'an informal term for a large, diverse group of photosynthetic eukaryotic ORGANISMS'. An organism |
| Geologic | 381 | BACDIVE | Generic "Geologic" bin spanning rock, sediment and subsurface. ENVO covers each specifically; nothing covers the bin without misattributing the rest. |
| host_animal_endotherm_intratissue | 341 | MADIN | Category override (#57): a minted identifier gives infer_category nothing to read — no ontology term, no GOLD path — so every Madin habitat named in the BacDive vocabulary fell to OTHER. Inside the tissue of a warm-blood |
| Sponge | 323 | GOLD | Sponges as host. ENVO:01000161 marine sponge reef is the reef environment, not the sponge as a host, so it is not a substitute. Parented to animal-associated environment. ENVO term request. |
| Nematoda | 300 | GOLD | Nematodes as host. Parented to animal-associated environment. ENVO term request. |
| Equidae-Horse | 269 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Brown Algae | 231 | GOLD | Non-habitat screen (#12): grounded EXACT to FOODON:03412395 'brown algae', which FOODON uses for the TAXON — red algae is defined there as 'one of the oldest groups of eukaryotic algae, and one of the largest phyla' — no |
| Leporidae-Rabbit/Hare | 217 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| food_fermented | 173 | MADIN | Category override (#57): a minted identifier gives infer_category nothing to read — no ontology term, no GOLD path — so every Madin habitat named in the BacDive vocabulary fell to OTHER. A fermented food is FOOD, the cat |
| Arthropoda: Chelicerates | 169 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Annelida | 150 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Reptilia | 133 | GOLD | xref-only review (#43): kg-microbe maps this to NCBITaxon:8504, which is OVER-NARROW — Lepidosauria excludes turtles and crocodilians, which Reptilia includes. The record carries no xref for it: this is a GOLD path and t |
| host_animal_endotherm_rumen | 132 | MADIN | Category override (#57): a minted identifier gives infer_category nothing to read — no ontology term, no GOLD path — so every Madin habitat named in the BacDive vocabulary fell to OTHER. The rumen is an anatomical compar |
| Non-marine Saline and Alkaline | 121 | GOLD | xref-only review (#43): a quality is a property of a habitat rather than a habitat, the call already recorded for Acidic, Humid and Arid. The xref also drops the saline half of the source. |
| Green algae | 108 | GOLD | Non-habitat screen (#12): grounded EXACT to FOODON:03412502 'green algae', which FOODON uses for the TAXON — red algae is defined there as 'one of the oldest groups of eukaryotic algae, and one of the largest phyla' — no |
| Cnidaria | 102 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Rodentia-Other | 97 | BACDIVE | Cohort review: the other half of the NCIT:C17649 'Other' merge. Same reasoning as the invertebrate source it was collapsing with — a bucket term is not an identity. |
| Biopsy | 95 | BACDIVE | CLOSE-grounding review (#12): the seeder made NCIT:C15189 'Biopsy Procedure' the identity of BacDive's 'Biopsy' category, 95 strains. A procedure is not a habitat — it is the act of taking the sample, not the place the o |
| Cnidaria | 95 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Larva | 94 | GOLD | Life-stage review (#112): carried UBERON:0002548 'larva' as a parent, reached by the ambiguous-leaf rule rather than the path — several GOLD paths end in the same leaf, so the ones that do not claim the term keep it as a |
| Porifera | 90 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| alga | 88 | MADIN | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Porifera-Sponges | 86 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Lesion | 81 | GOLD | Stale-sweep review (#12): NCIT:C3824 'Lesion' matches the label now, but it is a pathological finding rather than a place, and the habitat here is the skin the lesion is on. The sweep's answer was right and its stated re |
| Ascidians | 79 | GOLD | Ascidians as host. BTO:0000090 is a biological-source term rather than a habitat; treated as the other host clades are, parented to animal-associated environment. ENVO term request. |
| Cnidaria-Corals | 75 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Red algae | 73 | GOLD | Non-habitat screen (#12): grounded EXACT to FOODON:03411743 'red algae', which FOODON uses for the TAXON — red algae is defined there as 'one of the oldest groups of eukaryotic algae, and one of the largest phyla' — not |
| Indoor Air | 72 | GOLD | Indoor air. kg-microbe's mapping table pointed this at ENVO:01000855, which it labels 'indoor air' and ENVO labels 'area of mixed forest' — a different concept, now rejected by the label check. No indoor-air term exists |
| Seaweed | 69 | GOLD | Non-habitat screen (#12): grounded EXACT to FOODON:03412266 'seaweed', defined there as 'a macroscopic, multicellular, marine algae (kingdom Protista)' — the organism, not the habitat. The concept under Environmental > A |
| Aquatic-mammal | 69 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Lichen | 66 | GOLD | Organism-identity screen (#109): grounded EXACT to FOODON:03412345 'lichen', which is a composite organism arising from algae or cyanobacteria living among fungal filaments — an organism, not a place. The screen that exi |
| Aquatic-plant | 66 | BACDIVE | Grounding-cohort review (#62): was FOODON:03401156 '50122200 - aquatic plants prepared/processed (gs1 gpc)', a UNSPSC commodity code for prepared food. An aquatic plant as an isolation source is a living host, not a prep |
| Dust | 65 | GOLD | Indoor dust is settled particulate matter in a built environment, not air. GOLD's Air branch is about where the sample came from, not what it is. |
| Oyster | 61 | GOLD | Organism-identity screen (#109): grounded EXACT to FOODON:03411224 'oyster', which is a bivalve mollusc — an organism, not a place. The screen that exists to catch exactly this reported 0 for months because it tested onl |
| Core-sample | 60 | BACDIVE | Cohort review: the screen's known blind spot, caught by reading the corpus rather than the ranking. NCIT:C180316 "Nucleotide Sequence Sample Name" is a metadata field name, not a place; it shares the word "sample" with t |
| Bivalves | 59 | GOLD | Bivalves as host. FOODON:03412113 bivalve is a food product class, not a host organism, so it is the wrong kind of term entirely. Parented to animal-associated environment like the other host clades. ENVO term request. |
| Sea Urchin | 53 | GOLD | Organism-identity screen (#109): grounded EXACT to FOODON:03412107 'sea urchin', which is an echinoderm — an organism, not a place. The screen that exists to catch exactly this reported 0 for months because it tested onl |
| Outdoor Air | 42 | GOLD | Outdoor air. The mapping table pointed this at ENVO:01000829, which it labels 'outdoor air' and ENVO labels 'water vapour saturated air'. No outdoor-air term in the slice; parented to air. Term request. |
| Amphibia | 41 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Protozoa | 32 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Root-Tooth | 28 | BACDIVE | Cohort review: NCIT:C33446 'Root' is unqualified and reads as a plant root, not the root of a tooth. The slice has no tooth-root term. Real habitat, no term. |
| Cooling-tower | 26 | BACDIVE | Cohort review: NCIT:C48957 'Tower' is a structure of any kind. The slice has cooling processes and ENVO:03600002 'cooling water' but no cooling tower; the water is the medium, not the site. A Legionella habitat worth an |
| Lesion | 23 | GOLD | Stale-sweep review (#12): the fish skin-lesion concept, same as the human one — NCIT's 'Lesion' is a finding, not a place. Path: Host-associated > Fish > Integumentary system > Skin > Lesion |
| Tunicates | 23 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Echinodermata | 21 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Dust-Ash | 20 | BACDIVE | Cohort review: dust and ash are different materials and the slice has both (ENVO:00002008, ENVO:02000090). Grounding to either half would assert an identity the source does not have. |
| Waste-gas | 20 | BACDIVE | Grounding-cohort review (#62): was ENVO:01001155 'astrogeological gas', which carries the bare synonym 'gas' and so matches any gas source at all. Waste gas from an industrial process is a real habitat and the slice has |
| Starter-culture | 19 | BACDIVE | Grounding-cohort review (#62): was FOODON:03544454 '44540 - starter cultures (efsa foodex2)', a food-classification code rather than a place. A starter culture is a real habitat for the organisms in it; the slice has no |
| Sea cucumber | 17 | GOLD | Organism-identity screen (#109): grounded EXACT to FOODON:02022154 'sea cucumber', which is an echinoderm — an organism, not a place. The screen that exists to catch exactly this reported 0 for months because it tested o |
| Gall | 16 | BACDIVE | GOLD's plant context means a plant gall; the proposal offered bile material, which is a different thing entirely. No plant-gall term in the vendored slice. ENVO term request. Path: Gall |
| Sourdough | 15 | GOLD | Risky-grounding review (#12): the seeder grounded 'Engineered > Food production > Sourdough' to FOODON:03302481 'sourdough bread'. Sourdough is the leaven — a flour-and-water culture of lactic acid bacteria and yeast — a |
| Gingival crevice/sulcus | 15 | GOLD | Variant-match review (#12): the variant route reaches UBERON:0000093 'sulcus', defined as any depression or fissure in the surface of an organ — a bucket that would collect every groove in the body. UBERON has no gingiva |
| Plankton | 14 | GOLD | Host-taxon reversal (#114): NOT_APPLICABLE on the reasoning that plankton is 'an assemblage of organisms rather than a place'. Organisms can be habitats — plankton hosts epibiotic and particle-attached microbial communit |
| Peat moss | 11 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| tuberclar | 11 | PREGO | EXACT-grounding sample (#69): BTO:0002173 'tubercle' matches the label exactly, but BTO defines it as the dorsal bosses on adult male Schistosoma. A tubercle as an isolation source is a tuberculous lesion; the two share |
| Persistent organic pollutants (POP) | 9 | GOLD | Variant-match review (#12): the variant route strips GOLD's parenthetical and reaches UBERON:0002622 'preoptic periventricular nucleus', a structure in the BRAIN, for a class of industrial chemicals. The path is Engineer |
| Spot-Leaf,Stem | 5 | BACDIVE | Cohort review: a leaf-or-stem lesion. PO:0009047 'stem' drops the leaf and is also the target of 'Rot-Root,Stem', so adopting it would merge two different plant diseases onto one record. |
| Dissolved organics (anaerobic) | 3 | GOLD | Stale-sweep review (#84): the variant search reaches PATO:0001456 'anaerobic' by taking the parenthetical from 'Dissolved organics (anaerobic)'. A quality is not a habitat — the call already recorded for Acidic, Humid, A |
| Embryo | 3 | GOLD | Life-stage review (#112): carried UBERON:0000922 'embryo' as a parent, reached by the ambiguous-leaf rule rather than the path — several GOLD paths end in the same leaf, so the ones that do not claim the term keep it as |
| Protist | 3 | BACDIVE | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Plankton | 2 | GOLD | Host-taxon reversal (#114): NOT_APPLICABLE on the reasoning that plankton is 'an assemblage of organisms rather than a place'. Organisms can be habitats — plankton hosts epibiotic and particle-attached microbial communit |
| Monument | 2 | GOLD | Narrowed-grounding review (#67): was ENVO:00000359 'natural monument', which is a protected-area designation. GOLD's path is Engineered > Built environment > Monument, so this is a built stone monument — close to the opp |
| Prepupa | 2 | GOLD | Life-stage review (#112), applying the rule #114 settled: the whole host ORGANISM gets its own identity plus an <X>-associated environment term, while PARTS of a host ground to the anatomy term as gut, skin and lung alre |
| Rot-Root,Stem | 2 | BACDIVE | Cohort review: root-or-stem rot. Same PO:0009047 'stem' merge as the leaf-spot source, and the same objection — the dropped alternative is half the concept. |
| Oil/Gas pipeline | 1 | GOLD | The habitat is the pipeline interior; the proposal offered ENVO:00002985 oil, the substance. No pipeline term in the slice. ENVO term request. Path: Engineered > Built environment > Pipeline > Oil/Gas pipeline |
| Bacteria | 1 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Larva: Nauplius | 1 | GOLD | Life-stage review (#112): carried UBERON:0002548 'larva' as a parent, reached by the ambiguous-leaf rule rather than the path — several GOLD paths end in the same leaf, so the ones that do not claim the term keep it as a |
| Surface | 1 | GOLD | Disjoint-grounding review (#62): was UBERON:0002416 'integumental system', an ANIMAL organ system, for a plant leaf surface — matched across kingdoms on a synonym. The slice has no plain plant-surface or phyllosphere ter |
| Rock core/Sediment | 1 | GOLD | GOLD conflates rock core and sediment in one node, so neither term is honest as the identity. Pulled out of the class-level sweep, whose note wrongly claimed no term matched. Label: 'Rock core/Sediment'. |
| Plankton | 0 | GOLD | Host-taxon reversal (#114): NOT_APPLICABLE on the reasoning that plankton is 'an assemblage of organisms rather than a place'. Organisms can be habitats — plankton hosts epibiotic and particle-attached microbial communit |
| Air scrubber | 0 | GOLD | An air scrubber is a piece of equipment. GOLD files it under Air because the sample is scrubber air, but the habitat named by this leaf is the device, which belongs with the other built and managed environments. |
| Biofilm | 0 | GOLD | A biofilm growing inside an air scrubber. Whatever GOLD's branch, a biofilm is not air; it is a community on engineered equipment. |
| Indoor | 0 | GOLD | GOLD's 'Indoor' node. The mapping table pointed it at ENVO:01000856, which it labels 'indoor environment' and ENVO labels 'temperate marginal sea biome'. No indoor-environment term in the vendored slice. Term request. |
| Material | 0 | GOLD | Stale-sweep review (#12): NCIT:C48187 'Material' matches the label and carries none of the meaning — a residual bucket like the NCIT 'Other' and 'Part' terms already refused in #43. Path: Engineered > Industrial producti |
| Stone | 0 | GOLD | Stale-sweep review (#12): NCIT:C35708 'Stone' matches the label, but the path is Built environment > Monument > Stone, and NCIT's term is not the building material. Stonework is a real habitat with no term in the slice. |
| Subway | 0 | GOLD | Narrowed-grounding review (#67): was ENVO:03501109 'subway train'. GOLD's path is Engineered > Built environment > City > Subway, which is the system or the station rather than the rolling stock; the slice has train term |
| Grains/Grain products | 0 | GOLD | The proposal offered ENVO:01003002 particle via the synonym grain, which is a different sense of the word. No cereal-grain habitat term in the slice. Term request. Path: Engineered > Food production > Grains/Grain produc |
| Accessory nidamental gland (ANG) | 0 | GOLD | Variant-match review (#12): the variant route reaches UBERON:0002788 'anterior nuclear group', a region of the THALAMUS, for a mollusc reproductive gland — a match with nothing behind it. UBERON has no nidamental gland t |
| Air sacs | 0 | GOLD | Sibling-path review (#12): grounding the bird 'Air sacs' concept made this one's sweep stale, but UBERON's air sacs are ALL vertebrate — UBERON:0009060 is defined as extensions of the lungs of birds, and every sibling te |
| C1/Glandular saccules | 0 | GOLD | Variant-match review (#12): the variant route reaches UBERON:0001092 'vertebral bone 1'. The path is Mammals > Digestive system > Stomach, so C1 is the first compartment of a camelid stomach — the same reading already re |
| C2 | 0 | GOLD | Disjoint-grounding review (#62): was UBERON:0001093 'vertebral bone 2'. The path is Host-associated > Mammals > Digestive system > Stomach > C2, so C2 is the second compartment of a camelid stomach, not a neck vertebra. |
| C3 | 0 | GOLD | Disjoint-grounding review (#62): was UBERON:0002960 'central oculomotor nucleus', a brainstem structure. Same as C2 — the path is Digestive system > Stomach > C3, a camelid stomach compartment. Path: Host-associated > Ma |
| Ceros | 0 | GOLD | Variant-match review (#12): the variant route reaches FOODON:03413986 'cero', which is a mackerel. The path is Mammals > Integumentary system, so this is a keratinous integumentary structure, not a fish. No term in the s |
| Embryo | 0 | GOLD | Life-stage review (#112): carried UBERON:0000922 'embryo' as a parent, reached by the ambiguous-leaf rule rather than the path — several GOLD paths end in the same leaf, so the ones that do not claim the term keep it as |
| Embryo | 0 | GOLD | Life-stage review (#112), applying the rule #114 settled: the whole host ORGANISM gets its own identity plus an <X>-associated environment term, while PARTS of a host ground to the anatomy term as gut, skin and lung alre |
| Fungi | 0 | GOLD | Organism-identity screen (#109): carried FOODON:03411261 'fungus' as a parent, a taxonomic grouping rather than a place, reached by the ambiguous-leaf rule. The concept is fungi acting as host to an endosymbiont, so it i |
| Gaster | 0 | GOLD | Disjoint-grounding review (#62): was UBERON:0000945 'stomach', a vertebrate organ. The path is Arthropoda: Insects > Abdomen > Metasoma > Gaster, and an insect gaster is a region of the abdomen rather than a stomach. Pat |
| Larva | 0 | GOLD | Life-stage review (#112): carried UBERON:0002548 'larva' as a parent, reached by the ambiguous-leaf rule rather than the path — several GOLD paths end in the same leaf, so the ones that do not claim the term keep it as a |
| Larva: Zoea | 0 | GOLD | Life-stage review (#112): carried UBERON:0002548 'larva' as a parent, reached by the ambiguous-leaf rule rather than the path — several GOLD paths end in the same leaf, so the ones that do not claim the term keep it as a |
| Pupa | 0 | GOLD | Life-stage review (#112), applying the rule #114 settled: the whole host ORGANISM gets its own identity plus an <X>-associated environment term, while PARTS of a host ground to the anatomy term as gut, skin and lung alre |
| Tunicates | 0 | GOLD | Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habit |
| Beehive: Cerumen | 0 | GOLD | Sibling-path review (#12): grounding 'Cerumen/Earwax' made this stale, but UBERON:0002297 'cerumen' is defined as the secretion of apocrine sweat glands in the external auditory canal. Beehive cerumen is the wax-and-prop |
| Eutric | 0 | GOLD | Soil-classification review: 'Eutric' is a WRB QUALIFIER (base saturation >=50%), not a reference soil group, so there is no term for it and there should not be — the same reading already recorded for Acidic, Humid, Arid |
| Spicules | 0 | GOLD | Variant-match review (#12): the variant route reaches UBERON:3010830 'spicule', which is animal anatomy. The path is Terrestrial > Deep subsurface > Cave, where a spicule is a mineral speleothem — a homonym across kingdo |