Mammals: Human

habitatmech:GOLD.cd0b0940e5 ·HOST_ASSOCIATED ·UNGROUNDED REVIEWED

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
Source	Label / path	Assertions	Unit
BACDIVE	Human kg-microbe's isolation-source mapping table has a row for this source with no ontology target; treated as ungrounded rather than re-grounded by lexical match.	11697	STRAIN
GOLD	Host-associated > Mammals: Human 4 GOLD ecosystem node ids share this path; first shown. See data/raw/gold_ecosystem_paths.tsv.	40432	ORGANISM

Broader habitats

environmental system determined by an organism ENVO:01001000
animal-associated environment ENVO:01001002

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
Taxon	Source	Rank	Pool
Escherichia coli `NCBITaxon:562`	BACDIVE	1	2068
Streptococcus pneumoniae `NCBITaxon:1313`	BACDIVE	2	2068
Campylobacter jejuni `NCBITaxon:197`	BACDIVE	3	2068
Staphylococcus aureus `NCBITaxon:1280`	BACDIVE	4	2068
Streptococcus anginosus `NCBITaxon:1328`	BACDIVE	5	2068
[Haemophilus] ducreyi `NCBITaxon:730`	BACDIVE	6	2068
Pseudomonas aeruginosa `NCBITaxon:287`	BACDIVE	7	2068
Haemophilus influenzae `NCBITaxon:727`	BACDIVE	8	2068
Capnocytophaga canimorsus `NCBITaxon:28188`	BACDIVE	9	2068
Actinomyces viscosus `NCBITaxon:1656`	BACDIVE	10	2068
Lacticaseibacillus rhamnosus `NCBITaxon:47715`	BACDIVE	11	2068
Enterococcus faecium `NCBITaxon:1352`	BACDIVE	12	2068
Gardnerella vaginalis `NCBITaxon:2702`	BACDIVE	13	2068
Salmonella enterica `NCBITaxon:28901`	BACDIVE	14	2068
Bacteria `NCBITaxon:2`	BACDIVE	15	2068
Schaalia odontolytica `NCBITaxon:1660`	BACDIVE	16	2068
Actinotignum schaalii `NCBITaxon:59505`	BACDIVE	17	2068
Granulicatella adiacens `NCBITaxon:46124`	BACDIVE	18	2068
Bordetella pertussis `NCBITaxon:520`	BACDIVE	19	2068
Corynebacterium sp. `NCBITaxon:1720`	BACDIVE	20	2068
Stenotrophomonas maltophilia `NCBITaxon:40324`	BACDIVE	21	2068
Aggregatibacter aphrophilus `NCBITaxon:732`	BACDIVE	22	2068
Actinomyces naeslundii `NCBITaxon:1655`	BACDIVE	23	2068
Streptococcus sanguinis `NCBITaxon:1305`	BACDIVE	24	2068
Lactobacillus gasseri `NCBITaxon:1596`	BACDIVE	25	2068

Also called

Human — BacDive

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

CONFIRM_UNGROUNDED 2026-08-12 · claude-opus-5
Confirmed UNGROUNDED: no ontology term fits this concept. Nearest broader term ENVO:01001002 'animal-associated environment' attached as a parent. Humans as host, the single largest ungrounded concept at 40432 GOLD organisms. No human-associated environment term exists in ENVO. Deliberately not grounded to animal-associated environment: every host clade would then merge onto one record and the host distinction is the entire content. Highest-value ENVO term request. (source concept habitatmech:GOLD.cd0b0940e5)
SAME_AS 2026-08-17 · claude-opus-5
Merged into habitatmech:GOLD.cd0b0940e5 'Mammals: Human': the same concept under another source's name. Novel-concept merge (#116): BacDive's 'Human' and GOLD's 'Mammals: Human' are the same habitat — a human acting as host — and both are novel, so neither has an ontology term to merge on. Before SAME_AS they were two permanent records holding 40,432 and 11,697 assertions for one concept, published as two pages, and the largest habitat in the corpus appeared nowhere as such. Merged onto the GOLD identifier because it carries the larger attestation and the deeper path; the choice of which id survives is arbitrary between two minted ids and is recorded here rather than left to ordering. Both keep their attestations on the merged record, so no evidence is lost. (source concept habitatmech:BACDIVE.c9b246fcbb)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.