environmental system determined by an organism

ENVO:01001000 ·resolve ·HOST_ASSOCIATED ·EXACT REVIEWED

An environmental system which is determined by a living organism. — ENVO

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
Source	Label / path	Assertions	Unit
BACDIVE	Host kg-microbe's isolation-source mapping table has a row for this source with no ontology target; treated as ungrounded rather than re-grounded by lexical match.	25581	STRAIN
GOLD	Host-associated 5 GOLD ecosystem node ids share this path; first shown. See data/raw/gold_ecosystem_paths.tsv.	3307	ORGANISM

Broader habitats

environmental system ENVO:01000254

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
Taxon	Source	Rank	Pool
Sorangium cellulosum `NCBITaxon:56`	BACDIVE	1	6801
Corallococcus coralloides `NCBITaxon:184914`	BACDIVE	2	6801
Nannocystis exedens `NCBITaxon:54`	BACDIVE	3	6801
Myxococcus fulvus `NCBITaxon:33`	BACDIVE	4	6801
Escherichia coli `NCBITaxon:562`	BACDIVE	5	6801
Archangium sp. `NCBITaxon:1872627`	BACDIVE	6	6801
Campylobacter jejuni `NCBITaxon:197`	BACDIVE	7	6801
Streptococcus pneumoniae `NCBITaxon:1313`	BACDIVE	8	6801
Herpetosiphon sp. `NCBITaxon:71864`	BACDIVE	9	6801
Bacteria `NCBITaxon:2`	BACDIVE	10	6801
Myxococcus virescens `NCBITaxon:83456`	BACDIVE	11	6801
Staphylococcus aureus `NCBITaxon:1280`	BACDIVE	12	6801
Streptococcus anginosus `NCBITaxon:1328`	BACDIVE	13	6801
[Haemophilus] ducreyi `NCBITaxon:730`	BACDIVE	14	6801
Pseudomonas aeruginosa `NCBITaxon:287`	BACDIVE	15	6801
Capnocytophaga canimorsus `NCBITaxon:28188`	BACDIVE	16	6801
Myxococcus xanthus `NCBITaxon:34`	BACDIVE	17	6801
`NCBITaxon:57`	BACDIVE	18	6801
Actinomyces viscosus `NCBITaxon:1656`	BACDIVE	19	6801
Haemophilus influenzae `NCBITaxon:727`	BACDIVE	20	6801
Enterococcus faecium `NCBITaxon:1352`	BACDIVE	21	6801
Lacticaseibacillus rhamnosus `NCBITaxon:47715`	BACDIVE	22	6801
Gardnerella vaginalis `NCBITaxon:2702`	BACDIVE	23	6801
Salmonella enterica `NCBITaxon:28901`	BACDIVE	24	6801
uncultured Bacillus sp. `NCBITaxon:83428`	BACDIVE	25	6801

Also called

Host — BacDive
Host-associated — GOLD
host-associated environment — ENVO

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

GROUND 2026-08-16 · claude-opus-5
Grounded to ENVO:01001000 'environmental system determined by an organism' (EXACT). Term-request re-check (#12): this was recorded as an ENVO term request on the premise that "ENVO has only plant-associated and animal-associated environment with no shared parent". That premise is false. ENVO:01001000 'environmental system determined by an organism' is that shared parent — the vendored subclass edges show plant-associated (ENVO:01001001), animal-associated (ENVO:01001002) and fungi-associated (ENVO:01001041) environment all asserted under it — and it has been in the slice the whole time. Its definition, 'an environmental system which is determined by a living organism', is exactly what this top-level bin means: an isolate whose habitat is a living host. Grounded EXACT. The claim was made by hand and never machine-rechecked, which is the same staleness the class-level sweeps have a gate for and individually-decided records did not. (source concept habitatmech:BACDIVE.baf38460e6)
GROUND 2026-08-16 · claude-opus-5
Grounded to ENVO:01001000 'environmental system determined by an organism' (EXACT). Term-request re-check (#12): this was recorded as an ENVO term request on the premise that "ENVO has only plant-associated and animal-associated environment with no shared parent". That premise is false. ENVO:01001000 'environmental system determined by an organism' is that shared parent — the vendored subclass edges show plant-associated (ENVO:01001001), animal-associated (ENVO:01001002) and fungi-associated (ENVO:01001041) environment all asserted under it — and it has been in the slice the whole time. Its definition, 'an environmental system which is determined by a living organism', is exactly what this top-level bin means: an isolate whose habitat is a living host. Grounded EXACT. The claim was made by hand and never machine-rechecked, which is the same staleness the class-level sweeps have a gate for and individually-decided records did not. (source concept habitatmech:GOLD.d3b891e82e)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.