HabitatMech

Rodentia-Other

habitatmech:BACDIVE.745e245512 ·HOST_ASSOCIATED ·UNGROUNDED REVIEWED

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
SourceLabel / pathAssertionsUnit
BACDIVE Rodentia-Other 97 STRAIN

Broader habitats

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
TaxonSourceRankPoolCorroborated
Necropsobacter rosorum NCBITaxon:908285 BACDIVE 1 80
Streptococcus NCBITaxon:1301 BACDIVE 2 80
Actinomyces viscosus NCBITaxon:1656 BACDIVE 3 80
Yersinia enterocolitica NCBITaxon:630 BACDIVE 4 80
Actinobacillus capsulatus NCBITaxon:717 BACDIVE 5 80
Caviibacter abscessus NCBITaxon:1766719 BACDIVE 6 80
Alloscardovia criceti NCBITaxon:356828 BACDIVE 7 80
Bifidobacterium tsurumiense NCBITaxon:356829 BACDIVE 8 80
Staphylococcus microti NCBITaxon:569857 BACDIVE 9 80
Yersinia pseudotuberculosis NCBITaxon:633 BACDIVE 10 80
Chlamydia caviae NCBITaxon:83557 BACDIVE 11 80
Veillonella criceti NCBITaxon:103891 BACDIVE 12 80
Bifidobacterium tsurumiense DSM 17777 NCBITaxon:1121112 BACDIVE 13 80
Glycomyces arizonensis DSM 44726 NCBITaxon:1121926 BACDIVE 14 80
Alloscardovia criceti DSM 17774 NCBITaxon:1122228 BACDIVE 15 80
Streptococcus castoreus DSM 17536 NCBITaxon:1123299 BACDIVE 16 80
Nocardia otitidiscaviarum NBRC 14405 NCBITaxon:1206732 BACDIVE 17 80
Citrobacter rodentium NBRC 105723 = DSM 16636 NCBITaxon:1218085 BACDIVE 18 80
Bacteroides rodentium JCM 16496 NCBITaxon:1236512 BACDIVE 19 80
Bacteroides faecichinchillae JCM 17102 NCBITaxon:1236513 BACDIVE 20 80
Bacteroides stercorirosoris JCM 17103 NCBITaxon:1236514 BACDIVE 21 80
Mammaliicoccus sciuri NCBITaxon:1296 BACDIVE 22 80
Streptococcus sobrinus NCBITaxon:1310 BACDIVE 23 80
Streptococcus criceti NCBITaxon:1333 BACDIVE 24 80
Helicobacter aurati NCBITaxon:137778 BACDIVE 25 80

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

  1. CONFIRM_UNGROUNDED 2026-08-25 · codex-gpt-5

    Confirmed UNGROUNDED: no ontology term fits this concept. Nearest broader term ENVO:01001002 'animal-associated environment' attached as a parent. Residual-host review (#192): BacDive's live vocabulary places `Rodentia (Other)` under `#Host` as the sibling of `#Muridae (Mouse/Rat)`. It is a real animal-host environment, not NCIT:C17649 `Other`; that contentless lexical target remains rejected. ENVO:01001002 is genuinely broader and the category is HOST_ASSOCIATED. The source bucket means rodent hosts not assigned to the Muridae sibling, so it stays minted and separate: merging would erase the family-rank boundary, while requesting an ontology class defined by a mutable “everything else” exclusion would make its meaning change whenever BacDive adds a sibling. Hamsters and voles remain in scope despite vernacular mouse names; the attesting Actinobacillus capsulatus includes a reported rabbit-derived type strain outside Rodentia, so source assignment is preserved as evidence rather than treated as a taxonomic guarantee. (source concept habitatmech:BACDIVE.745e245512)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.