albicidin
naturalproductmech:mibig-873e47f527 MINTED SEEDED antibacterial
What these status tags mean
Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.
Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.
Structure
| Standard InChIKey | NZSWNNDHPOTJNH-VEJILBAHSA-N |
|---|---|
| SMILES | C/C(=C\C1=CC=C(C=C1)O)/C(=O)NC2=CC=C(C=C2)C(=O)N[C@@H](CC#N)C(=O)NC3=CC=C(C=C3)C(=O)NC4=C(C(=C(C=C4)C(=O)NC5=C(C(=C(C=C5)C(=O)O)O)OC)O)OC |
| Stereochemistry | fully defined |
| Cross-references | pubchem:78322514, npatlas:NPA020027 |
Filing pathway
Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is nrps, pks, from MIBiG.
Producer organisms 1
A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.
| Taxon | Basis | Cluster | Evidence |
|---|---|---|---|
| Xanthomonas albilineans NCBITaxon:29447 |
SOURCE_ASSERTION | mibig:BGC0001088 | PMID:15077674 |
Occurrences 2
Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.
| Taxon | Source | Reference |
|---|---|---|
| Xanthomonas albilineans NCBITaxon:29447 |
LOTUS | DOI:10.1038/NCHEMBIO.1734 |
| Xanthomonas albilineans NCBITaxon:29447 |
LOTUS | DOI:10.1094/MPMI.2004.17.4.414 |
Biosynthetic gene clusters 1
| Accession | Host | Locus evidence | Genome |
|---|---|---|---|
| mibig:BGC0001088 | Xanthomonas albilineans NCBITaxon:29447 |
CLUSTER_UNSTATED | genbank:AJ586576.1 |
A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.
Mechanism & Biosynthesis Overview
Elsewhere in the fleet
- AntibioticMech — antibioticmech:aro-34c0642a61 (same structure, same inchikey)
Explore across X-Mech
Provenance
| Source concept | Source | Version |
|---|---|---|
| BGC0001088 | MIBIG | 5 |
This page is generated from data/natural_products/alkaloids/albicidin.yaml, which is generated from the committed inventories. Neither is edited by hand.