endocytic vesicle lumen
The volume enclosed by the membrane of an endocytic vesicle. [GO:0071682]
Part of: endocytic vesicle (GO:0030139)
Taxonomic distribution
NCBITaxon:4932Saccharomyces cerevisiae — COMMON: Budding yeast forms endocytic vesicles at cortical actin-based sites; the lumen is the bounded volume inside those endocytic carriers. [DOI:10.1016/j.devcel.2005.04.014]
Canonical examples
NCBITaxon:4932Saccharomyces cerevisiae — Budding-yeast cortical endocytic sites were used to characterize the ordered actin and coat modules that form endocytic vesicles. [DOI:10.1016/j.cell.2005.09.024]
Mechanism graphs
Endocytic vesicle lumen topology (FUNCTION)
The endocytic vesicle lumen is the bounded volume enclosed by the endocytic vesicle membrane inside an endocytic vesicle.
| Subject | Predicate | Object | Evidence |
|---|---|---|---|
| endocytic vesicle lumen | is part of | endocytic vesicle |
|
| endocytic vesicle membrane | bounds | endocytic vesicle lumen |
|
Discussions
- INTERPRETATION (RESOLVED): Use the cytoplasmic vesicle lumen rather than the generic intracellular organelle lumen as the curated parent. GO asserts GO:0071682 as part of an endocytic vesicle and directly under the broad intracellular organelle lumen. Because GO:0030139 endocytic vesicle is a cytoplasmic vesicle, GO:0060205 is the narrower inferred lumen parent that keeps endocytic vesicle lumen with the other cytoplasmic vesicle lumen subtypes in this corpus.
- INTERPRETATION (RESOLVED): Keep variable internalized cargo out of the endocytic vesicle lumen record. GO:0071682 denotes the bounded volume inside an endocytic vesicle rather than a stable molecular cargo class, and the cargo enclosed by an endocytic carrier depends on the uptake event and subtype.
Evidence
GO:0071682Gene Ontology cellular-component term for the endocytic vesicle lumen.GO:0060205Gene Ontology cellular-component parent term for cytoplasmic vesicle lumens.GO:0030139Gene Ontology cellular-component term for the enclosing endocytic vesicle.GO:0031410Gene Ontology cellular-component term for the broader cytoplasmic vesicle class that includes endocytic vesicles.GO:0030666Gene Ontology cellular-component term for the membrane that bounds an endocytic vesicle lumen.GO:0106176Gene Ontology cellular-component child term for clathrin-coated endocytic vesicle lumens.DOI:10.1016/j.devcel.2005.04.014Newpher et al. 2005, In Vivo Dynamics of Clathrin and Its Adaptor-Dependent Recruitment to the Actin-Based Endocytic Machinery in Yeast, Developmental Cell.DOI:10.1016/j.cell.2005.09.024Kaksonen, Toret and Drubin 2005, A Modular Design for the Clathrin- and Actin-Mediated Endocytosis Machinery, Cell.
Curation history
2026-09-16T10:58:05Zcodex · CREATED_RECORD — Scaffolded by scripts/new_record.py2026-09-16T10:59:24Zcodex · EXPANDED_RECORD — Added cytoplasmic-vesicle-lumen parentage, endocytic-vesicle parthood, Saccharomyces endocytic-site scope, GO/DOI evidence, a nonmechanistic lumen topology graph, and a resolved cargo-boundary discussion.2026-09-16T11:10:29Zcodex · ADDRESSED_PR_REVIEW — Resolved issue #1089 by documenting why GO:0060205 is the curated cytoplasmic-vesicle-lumen parent and by adding GO:0031410 support for the endocytic-vesicle to cytoplasmic-vesicle inference.
Source: data/structures/membrane_organelle/endocytic_vesicle_lumen.yaml