rumen_bacteria_medium

CultureMech:005024 bacterial COMPLEX LIQUID
Original name: RUMEN BACTERIA medium

Overview

External ontology
komodo.medium:330 (source link unavailable) — RUMEN BACTERIA medium
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'butyrivibrio_sp_medium', 'source': 'KOMODO', 'source_id': 'komodo.medium:704', 'original_category': 'bacterial'}
  • {'name': 'butyrivibrio_sp_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:704', 'original_category': 'bacterial'}
  • {'name': 'medium_330_modified_for_dsm_17630', 'source': 'KOMODO', 'source_id': 'komodo.medium:330_17630', 'original_category': 'bacterial'}
pH range
{'min': 6.7, 'max': 6.8}
Notes
Source: KOMODO ModelSEED | ID: 330 | DSMZ Medium: 330 (mediadive.medium:330) | Aerobic: Yes Commercial Product: LB Medium (Luria-Bertani, Miller formulation) Supplier: Multiple suppliers (Difco, Sigma, etc.) Catalog: Multiple (L3522 Sigma, 244520 BD) Source: https://www.laboratorynotes.com/preparation-of-luria-bertani-lb-miller-broth/ Accessed: 2026-03-28 Constituent composition researched from product specification.

Composition

flowchart LR
    CultureMech_005024["rumen_bacteria_medium"]
    ing0_K2HPO4["K2HPO4"]
    CultureMech_005024 --> ing0_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing0_K2HPO4 -.-> CHEBI_131527
    ing1_Trypticase_peptone["Trypticase peptone"]
    CultureMech_005024 --> ing1_Trypticase_peptone
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_005024 --> ing2_Yeast_extract
    ing3_Glycerol["Glycerol"]
    CultureMech_005024 --> ing3_Glycerol
    CHEBI_17754["CHEBI:17754"]
    ing3_Glycerol -.-> CHEBI_17754
    ing4_Sodium_resazurin["Sodium resazurin"]
    CultureMech_005024 --> ing4_Sodium_resazurin
    CHEBI_8806["CHEBI:8806"]
    ing4_Sodium_resazurin -.-> CHEBI_8806
    ing5_Na2CO3["Na2CO3"]
    CultureMech_005024 --> ing5_Na2CO3
    CHEBI_29377["CHEBI:29377"]
    ing5_Na2CO3 -.-> CHEBI_29377
    ing6_D_Glucose["D-Glucose"]
    CultureMech_005024 --> ing6_D_Glucose
    CHEBI_17634["CHEBI:17634"]
    ing6_D_Glucose -.-> CHEBI_17634
    ing7_Maltose["Maltose"]
    CultureMech_005024 --> ing7_Maltose
    CHEBI_17306["CHEBI:17306"]
    ing7_Maltose -.-> CHEBI_17306
    ing8_Cellobiose["Cellobiose"]
    CultureMech_005024 --> ing8_Cellobiose
    CHEBI_17057["CHEBI:17057"]
    ing8_Cellobiose -.-> CHEBI_17057
    ing9_Starch["Starch"]
    CultureMech_005024 --> ing9_Starch
    CHEBI_28017["CHEBI:28017"]
    ing9_Starch -.-> CHEBI_28017
    ing10_L_Cysteine_HCl_x_H2O["L-Cysteine HCl x H2O"]
    CultureMech_005024 --> ing10_L_Cysteine_HCl_x_H2O
    CHEBI_91248["CHEBI:91248"]
    ing10_L_Cysteine_HCl_x_H2O -.-> CHEBI_91248
    ing11_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_005024 --> ing11_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing11_Na2S_x_9_H2O -.-> CHEBI_76209
    ing12_KH2PO4["KH2PO4"]
    CultureMech_005024 --> ing12_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing12_KH2PO4 -.-> CHEBI_63036
    ing13_NaCl["NaCl"]
    CultureMech_005024 --> ing13_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing13_NaCl -.-> CHEBI_26710
    ing14__NH4_2SO4["(NH4)2SO4"]
    CultureMech_005024 --> ing14__NH4_2SO4
    CHEBI_62946["CHEBI:62946"]
    ing14__NH4_2SO4 -.-> CHEBI_62946
    ing15_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_005024 --> ing15_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing15_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing16_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_005024 --> ing16_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing16_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing17_Acetic_acid["Acetic acid"]
    CultureMech_005024 --> ing17_Acetic_acid
    CHEBI_15366["CHEBI:15366"]
    ing17_Acetic_acid -.-> CHEBI_15366
    ing18_Propionic_acid["Propionic acid"]
    CultureMech_005024 --> ing18_Propionic_acid
    CHEBI_30768["CHEBI:30768"]
    ing18_Propionic_acid -.-> CHEBI_30768
    ing19_Butyric_acid["Butyric acid"]
    CultureMech_005024 --> ing19_Butyric_acid
    CHEBI_30772["CHEBI:30772"]
    ing19_Butyric_acid -.-> CHEBI_30772
    ing20_n_Valeric_acid["n-Valeric acid"]
    CultureMech_005024 --> ing20_n_Valeric_acid
    CHEBI_17418["CHEBI:17418"]
    ing20_n_Valeric_acid -.-> CHEBI_17418
    ing21_iso_Butyric_acid["iso-Butyric acid"]
    CultureMech_005024 --> ing21_iso_Butyric_acid
    CHEBI_16135["CHEBI:16135"]
    ing21_iso_Butyric_acid -.-> CHEBI_16135
    ing22_Tryptone["Tryptone"]
    CultureMech_005024 --> ing22_Tryptone
    ing23_Yeast_extract["Yeast extract"]
    CultureMech_005024 --> ing23_Yeast_extract
    ing24_Sodium_chloride["Sodium chloride"]
    CultureMech_005024 --> ing24_Sodium_chloride
    ing24_Sodium_chloride -.-> CHEBI_26710
    ing25_iso_Valeric_acid["iso-Valeric acid"]
    CultureMech_005024 --> ing25_iso_Valeric_acid
    CHEBI_28484["CHEBI:28484"]
    ing25_iso_Valeric_acid -.-> CHEBI_28484
    ing26_Haemin["Haemin"]
    CultureMech_005024 --> ing26_Haemin
    CHEBI_50385["CHEBI:50385"]
    ing26_Haemin -.-> CHEBI_50385
    ing27_NaOH["NaOH"]
    CultureMech_005024 --> ing27_NaOH
    CHEBI_32145["CHEBI:32145"]
    ing27_NaOH -.-> CHEBI_32145

Ingredients (28)

# Ingredient Concentration Ontology Notes
1 K2HPO4
HO4P.2K 174.174 g/mol
0.3 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
2 Trypticase peptone 2 G_PER_L
3 Yeast extract 0.5 G_PER_L
4 Glycerol
C3H8O3 92.094 g/mol
0.5 G_PER_L CHEBI:17754
glycerol
5 Sodium resazurin
C12H7NO4 229.191 g/mol
0.0005 G_PER_L CHEBI:8806
Resazurin
6 Na2CO3
CO3.2Na 105.988 g/mol
4 G_PER_L CHEBI:29377
sodium carbonate
7 D-Glucose
C6H12O6 180.156 g/mol
0.5 G_PER_L CHEBI:17634
D-glucose
8 Maltose
C12H22O11 342.297 g/mol
0.5 G_PER_L CHEBI:17306
maltose
9 Cellobiose
C12H22O11 342.297 g/mol
0.5 G_PER_L CHEBI:17057
cellobiose
10 Starch 0.5 G_PER_L CHEBI:28017
starch
(soluble)
11 L-Cysteine HCl x H2O
C3H7NO2S.H2O.HCl 175.637 g/mol
0.25 G_PER_L CHEBI:91248
L-cysteine hydrochloride hydrate
12 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
0.25 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
13 KH2PO4
H2O4P.K 136.084 g/mol
6 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
14 NaCl
Cl.Na 58.443 g/mol
12 G_PER_L CHEBI:26710
sodium chloride
15 (NH4)2SO4
2H4N.O4S 132.141 g/mol
6 G_PER_L CHEBI:62946
ammonium sulfate
16 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
1.6 G_PER_L CHEBI:86158
calcium chloride dihydrate
17 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
2.5 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
18 Acetic acid
C2H4O2 60.052 g/mol
573.182 G_PER_L CHEBI:15366
acetic acid
19 Propionic acid
C3H6O2 74.079 g/mol
192.145 G_PER_L CHEBI:30768
propionic acid
20 Butyric acid
C4H8O2 88.106 g/mol
129 G_PER_L CHEBI:30772
butyric acid
21 n-Valeric acid
C5H10O2 102.133 g/mol
30.2827 G_PER_L CHEBI:17418
valeric acid
22 iso-Butyric acid
C4H8O2 88.106 g/mol
30.6375 G_PER_L CHEBI:16135
isobutyric acid
23 Tryptone
Multiple suppliers (Difco, Sigma, etc.) LB Medium (Luria-Bertani, Miller formulation) Multiple (L3522 Sigma, 244520 BD)
10.0 G_PER_L MICRO:0000182 (source link unavailable)
tryptone
Pancreatic digest of casein providing amino acids, peptides, and nitrogen; Constituent of LB Medium (Luria-Bertani, Miller formulation) commercial product
24 Yeast extract
Multiple suppliers (Difco, Sigma, etc.) LB Medium (Luria-Bertani, Miller formulation) Multiple (L3522 Sigma, 244520 BD)
5.0 G_PER_L FOODON:03315426
yeast extract
Autodigest of Saccharomyces cerevisiae providing vitamins, amino acids, and trace elements; Constituent of LB Medium (Luria-Bertani, Miller formulation) commercial product
25 Sodium chloride
Cl.Na 58.443 g/mol
Multiple suppliers (Difco, Sigma, etc.) LB Medium (Luria-Bertani, Miller formulation) Multiple (L3522 Sigma, 244520 BD)
10.0 G_PER_L CHEBI:26710
sodium chloride
Maintains osmotic equilibrium (Miller formulation); Constituent of LB Medium (Luria-Bertani, Miller formulation) commercial product
26 iso-Valeric acid
C5H10O2 102.133 g/mol
30.0247 G_PER_L CHEBI:28484
isovaleric acid
27 Haemin
C34H32ClFeN4O4 651.952 g/mol
0.5 G_PER_L CHEBI:50385
hemin
28 NaOH
HO.Na 39.997 g/mol
1 G_PER_L CHEBI:32145
sodium hydroxide

Target organisms

No target organisms are recorded.

Provenance

Merged from 5 source records.

TimestampCuratorActionNotes
2026-06-14T05:58:58.561437+00:00 idnf-grounding-fix-v1.0 Fixed ID_NOT_FOUND term groundings Absent/obsolete CHEBI term ids fixed - 1 re-grounded to the correct CHEBI, 0 de-grounded (mixture or unverifiable).
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 330
2026-02-03T11:19:19.385193 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 330
2026-03-13T06:19:29.615105Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:005024
2026-03-17T06:30:56.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:45.211102+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "RUMEN BACTERIA medium" to "rumen_bacteria_medium" for consistent matching
2026-05-20T06:00:51.226666+00:00 migrate_ph_range.py MIGRATED_PH_RANGE ph_range '6.7-6.8' -> {'min': 6.7, 'max': 6.8}
2026-06-05T07:40:22.496588+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 21 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:44.602510+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:47.507011+00:00 recipe-merger Merged 5 duplicate recipes into canonical record Sources: KOMODO_330_RUMEN_BACTERIA_medium, KOMODO_704_BUTYRIVIBRIO_SP._medium, butyrivibrio_sp_medium, medium_330_modified_for_dsm_17630, rumen_bacteria_medium
2026-08-06T03:04:47.507100+00:00 merge_recipes.py MERGED_RECIPES merged 5 source recipe(s) on fingerprint b6ddc39f7e7330d2a4ca2ac5546a92b958c579e8b4e1fee8bfc2869fc04d95a5