chopped_meat_medium_for_treponema_sp

CultureMech:006493 bacterial COMPLEX SOLID_AGAR
Original name: CHOPPED MEAT medium FOR TREPONEMA SP

Overview

External ontology
komodo.medium:78a (source link unavailable) — CHOPPED MEAT medium FOR TREPONEMA SP
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'chopped_meat_medium', 'source': 'KOMODO', 'source_id': 'komodo.medium:78', 'original_category': 'bacterial'}
  • {'name': 'medium_for_treponema_parvum', 'source': 'KOMODO', 'source_id': 'komodo.medium:78b', 'original_category': 'bacterial'}
  • {'name': 'anoxic_version', 'source': 'KOMODO', 'source_id': 'komodo.medium:78.1', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_16260', 'source': 'KOMODO', 'source_id': 'komodo.medium:78b.1', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_16369', 'source': 'KOMODO', 'source_id': 'komodo.medium:78b.2', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_5566', 'source': 'KOMODO', 'source_id': 'komodo.medium:78.2', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_1396', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_1396', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_1447', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_1447', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_14838', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_14838', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_15896', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_15896', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_19291', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_19291', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_19346', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_19346', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_19458', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_19458', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_19528', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_19528', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_20708', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_20708', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_2079', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_2079', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_21255', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_21255', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_21682', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_21682', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_22070', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_22070', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_22519', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_22519', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_22534', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_22534', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_22535', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_22535', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_2255', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_2255', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23057', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23057', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23058', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23058', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23370', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23370', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23371', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23371', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23386', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23386', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23387', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23387', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23594', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23594', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23917', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23917', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23919', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23919', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23940', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23940', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_23941', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_23941', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_24798', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_24798', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_3979', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_3979', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_3983', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_3983', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_3989', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_3989', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_3991', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_3991', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_3992', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_3992', 'original_category': 'bacterial'}
  • {'name': 'medium_78_modified_for_dsm_6011', 'source': 'KOMODO', 'source_id': 'komodo.medium:78_6011', 'original_category': 'bacterial'}
  • {'name': 'medium_78a_modified_for_dsm_12168', 'source': 'KOMODO', 'source_id': 'komodo.medium:78a_12168', 'original_category': 'bacterial'}
Notes
Source: KOMODO ModelSEED | ID: 78a | DSMZ Medium: 78a (mediadive.medium:78a) | Aerobic: No

Composition

flowchart LR
    CultureMech_006493["chopped_meat_medium_for_treponema_sp"]
    ing0_L_Histidine["L-Histidine"]
    CultureMech_006493 --> ing0_L_Histidine
    CHEBI_15971["CHEBI:15971"]
    ing0_L_Histidine -.-> CHEBI_15971
    ing1_L_Serine["L-Serine"]
    CultureMech_006493 --> ing1_L_Serine
    CHEBI_17115["CHEBI:17115"]
    ing1_L_Serine -.-> CHEBI_17115
    ing2_L_Glutamine["L-Glutamine"]
    CultureMech_006493 --> ing2_L_Glutamine
    CHEBI_18050["CHEBI:18050"]
    ing2_L_Glutamine -.-> CHEBI_18050
    ing3_Vitamin_B12["Vitamin B12"]
    CultureMech_006493 --> ing3_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing3_Vitamin_B12 -.-> CHEBI_176843
    ing4_Pantothenic_acid["Pantothenic acid"]
    CultureMech_006493 --> ing4_Pantothenic_acid
    CHEBI_7916["CHEBI:7916"]
    ing4_Pantothenic_acid -.-> CHEBI_7916
    ing5_Riboflavin["Riboflavin"]
    CultureMech_006493 --> ing5_Riboflavin
    CHEBI_17015["CHEBI:17015"]
    ing5_Riboflavin -.-> CHEBI_17015
    ing6_Pyridoxamine_hydrochloride["Pyridoxamine hydrochloride"]
    CultureMech_006493 --> ing6_Pyridoxamine_hydrochloride
    CHEBI_131531["CHEBI:131531"]
    ing6_Pyridoxamine_hydrochloride -.-> CHEBI_131531
    ing7_Biotin["Biotin"]
    CultureMech_006493 --> ing7_Biotin
    CHEBI_15956["CHEBI:15956"]
    ing7_Biotin -.-> CHEBI_15956
    ing8_Folic_acid["Folic acid"]
    CultureMech_006493 --> ing8_Folic_acid
    CHEBI_27470["CHEBI:27470"]
    ing8_Folic_acid -.-> CHEBI_27470
    ing9_Nicotinic_acid["Nicotinic acid"]
    CultureMech_006493 --> ing9_Nicotinic_acid
    CHEBI_15940["CHEBI:15940"]
    ing9_Nicotinic_acid -.-> CHEBI_15940
    ing10_Nicotine_amide["Nicotine amide"]
    CultureMech_006493 --> ing10_Nicotine_amide
    CHEBI_17154["CHEBI:17154"]
    ing10_Nicotine_amide -.-> CHEBI_17154
    ing11_alpha_lipoic_acid["alpha-lipoic acid"]
    CultureMech_006493 --> ing11_alpha_lipoic_acid
    CHEBI_16494["CHEBI:16494"]
    ing11_alpha_lipoic_acid -.-> CHEBI_16494
    ing12_p_Aminobenzoic_acid["p-Aminobenzoic acid"]
    CultureMech_006493 --> ing12_p_Aminobenzoic_acid
    CHEBI_30753["CHEBI:30753"]
    ing12_p_Aminobenzoic_acid -.-> CHEBI_30753
    ing13_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
    CultureMech_006493 --> ing13_Thiamine_HCl_x_2_H2O
    CHEBI_132751["CHEBI:132751"]
    ing13_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
    ing14_Ground_beef["Ground beef"]
    CultureMech_006493 --> ing14_Ground_beef
    ing15_NaOH["NaOH"]
    CultureMech_006493 --> ing15_NaOH
    CHEBI_32145["CHEBI:32145"]
    ing15_NaOH -.-> CHEBI_32145
    ing16_Casitone["Casitone"]
    CultureMech_006493 --> ing16_Casitone
    ing17_Yeast_extract["Yeast extract"]
    CultureMech_006493 --> ing17_Yeast_extract
    ing18_K2HPO4["K2HPO4"]
    CultureMech_006493 --> ing18_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing18_K2HPO4 -.-> CHEBI_131527
    ing19_Resazurin["Resazurin"]
    CultureMech_006493 --> ing19_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing19_Resazurin -.-> CHEBI_8806
    ing20_L_Cysteine_HCl["L-Cysteine HCl"]
    CultureMech_006493 --> ing20_L_Cysteine_HCl
    CHEBI_91247["CHEBI:91247"]
    ing20_L_Cysteine_HCl -.-> CHEBI_91247
    ing21_Agar["Agar"]
    CultureMech_006493 --> ing21_Agar
    CHEBI_2509["CHEBI:2509"]
    ing21_Agar -.-> CHEBI_2509
    ing22_Haemin["Haemin"]
    CultureMech_006493 --> ing22_Haemin
    CHEBI_50385["CHEBI:50385"]
    ing22_Haemin -.-> CHEBI_50385
    ing23_Vitamin_K3["Vitamin K3"]
    CultureMech_006493 --> ing23_Vitamin_K3
    CHEBI_28869["CHEBI:28869"]
    ing23_Vitamin_K3 -.-> CHEBI_28869
    ing24_Ethanol["Ethanol"]
    CultureMech_006493 --> ing24_Ethanol
    CHEBI_16236["CHEBI:16236"]
    ing24_Ethanol -.-> CHEBI_16236
    ing25_Vitamin_K1["Vitamin K1"]
    CultureMech_006493 --> ing25_Vitamin_K1
    CHEBI_18067["CHEBI:18067"]
    ing25_Vitamin_K1 -.-> CHEBI_18067

Ingredients (26)

# Ingredient Concentration Ontology Notes
1 L-Histidine
C6H9N3O2 155.157 g/mol
12 G_PER_L CHEBI:15971
L-histidine
2 L-Serine
C3H7NO3 105.093 g/mol
10 G_PER_L CHEBI:17115
L-serine
3 L-Glutamine
C5H10N2O3 146.146 g/mol
14 G_PER_L CHEBI:18050
L-glutamine
4 Vitamin B12 0.05 G_PER_L CHEBI:176843
vitamin B12
5 Pantothenic acid
C9H17NO5 219.237 g/mol
0.05 G_PER_L CHEBI:7916
pantothenic acid
6 Riboflavin
C17H20N4O6 376.369 g/mol
0.05 G_PER_L CHEBI:17015
riboflavin
7 Pyridoxamine hydrochloride
C8H12N2O2.HCl 204.657 g/mol
0.01 G_PER_L CHEBI:131531
pyridoxamine hydrochloride
8 Biotin
C10H16N2O3S 244.316 g/mol
0.02 G_PER_L CHEBI:15956
biotin
9 Folic acid
C19H19N7O6 441.404 g/mol
0.02 G_PER_L CHEBI:27470
folic acid
10 Nicotinic acid
C6H5NO2 123.111 g/mol
0.025 G_PER_L CHEBI:15940
nicotinic acid
11 Nicotine amide
C6H6N2O 122.127 g/mol
0.025 G_PER_L CHEBI:17154
nicotinamide
12 alpha-lipoic acid
C8H14O2S2 206.332 g/mol
0.05 G_PER_L CHEBI:16494
lipoic acid
13 p-Aminobenzoic acid
C7H7NO2 137.138 g/mol
0.05 G_PER_L CHEBI:30753
4-aminobenzoic acid
14 Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
0.05 G_PER_L CHEBI:132751
thiamine hydrochloride dihydrate
15 Ground beef 487.805 G_PER_L
16 NaOH
HO.Na 39.997 g/mol
26.0 G_PER_L CHEBI:32145
sodium hydroxide
 [Merged 2 duplicates: 25.0, 1.0]
17 Casitone 29.2683 G_PER_L
18 Yeast extract 4.87805 G_PER_L
19 K2HPO4
HO4P.2K 174.174 g/mol
4.87805 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
20 Resazurin
C12H7NO4 229.191 g/mol
0.00097561 G_PER_L CHEBI:8806
Resazurin
21 L-Cysteine HCl
C3H7NO2S.HCl 157.622 g/mol
0.487805 G_PER_L CHEBI:91247
L-cysteine hydrochloride
22 Agar 14.6341 G_PER_L CHEBI:2509
agar
 (for solid medium)
23 Haemin
C34H32ClFeN4O4 651.952 g/mol
0.5 G_PER_L CHEBI:50385
hemin
24 Vitamin K3
C11H8O2 172.183 g/mol
0.05 G_PER_L CHEBI:28869
menadione
25 Ethanol
C2H6O 46.069 g/mol
959.5 G_PER_L CHEBI:16236
ethanol
 [Merged 2 duplicates: 9.5, 950.0]
26 Vitamin K1
C31H46O2 450.707 g/mol
0.1 G_PER_L CHEBI:18067
phylloquinone

Target organisms

No target organisms are recorded.

Provenance

Merged from 44 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:03.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 78a
2026-02-03T11:19:04.892834 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 78
2026-03-13T03:09:04.733432Z data-quality-cleanup-v1.0 Data quality fixes Merged 2 duplicate ingredient(s)
2026-03-13T06:19:41.295737Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:006493
2026-03-17T06:30:10.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:58.734517+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "CHOPPED MEAT medium FOR TREPONEMA SP" to "chopped_meat_medium_for_treponema_sp" for consistent matching
2026-06-05T07:40:26.414768+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 20 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:45.878483+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:59.425980+00:00 recipe-merger Merged 44 duplicate recipes into canonical record Sources: KOMODO_78_CHOPPED_MEAT_medium, KOMODO_78a_CHOPPED_MEAT_medium_FOR_TREPONEMA_SP, KOMODO_78b_medium_FOR_TREPONEMA_PARVUM, anoxic_version, chopped_meat_medium_for_treponema_sp, for_dsm_16260, for_dsm_16369, for_dsm_5566, medium_78_modified_for_dsm_1396, medium_78_modified_for_dsm_1447, medium_78_modified_for_dsm_14838, medium_78_modified_for_dsm_15896, medium_78_modified_for_dsm_19291, medium_78_modified_for_dsm_19346, medium_78_modified_for_dsm_19458, medium_78_modified_for_dsm_19528, medium_78_modified_for_dsm_20708, medium_78_modified_for_dsm_2079, medium_78_modified_for_dsm_21255, medium_78_modified_for_dsm_21682, medium_78_modified_for_dsm_22070, medium_78_modified_for_dsm_22519, medium_78_modified_for_dsm_22534, medium_78_modified_for_dsm_22535, medium_78_modified_for_dsm_2255, medium_78_modified_for_dsm_23057, medium_78_modified_for_dsm_23058, medium_78_modified_for_dsm_23370, medium_78_modified_for_dsm_23371, medium_78_modified_for_dsm_23386, medium_78_modified_for_dsm_23387, medium_78_modified_for_dsm_23594, medium_78_modified_for_dsm_23917, medium_78_modified_for_dsm_23919, medium_78_modified_for_dsm_23940, medium_78_modified_for_dsm_23941, medium_78_modified_for_dsm_24798, medium_78_modified_for_dsm_3979, medium_78_modified_for_dsm_3983, medium_78_modified_for_dsm_3989, medium_78_modified_for_dsm_3991, medium_78_modified_for_dsm_3992, medium_78_modified_for_dsm_6011, medium_78a_modified_for_dsm_12168
2026-08-06T03:04:59.426370+00:00 merge_recipes.py MERGED_RECIPES merged 44 source recipe(s) on fingerprint 03321266f74fc000d54844a0230e35fb94574211611911ba26204ff862ace5ce