bioreactor

ENVO:00002123 ·resolve ·ENGINEERED ·EXACT SEEDED

A biomaterial containment unit which is capable of 1) containing a mass of environmental material which hosts an active collection of organisms and 2) maintaining conditions which are conducive to one or more metabolic activities of the organisms it contains. — ENVO

Machine-generated and unreviewed. Its grounding comes from the seeder's rules, not from a curator.

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
Source	Label / path	Assertions	Unit
ENVIRONMENTS_TABLE	bioreactor/digester Physicochemical parameter bands from kg-microbe's environment table.	—
GOLD	Engineered > Bioreactor 4 GOLD ecosystem node ids share this path; first shown. See data/raw/gold_ecosystem_paths.tsv.	604	ORGANISM
MADIN	bioreactor	232	TAXON
PREGO	bioreactor	101	TAXON

Broader habitats

biomaterial containment unit ENVO:01001816
Engineered habitatmech:GOLD.2acb39dd08

Environmental parameters

Physicochemical parameters
Parameter	Value	Source
GRADIENTS	low	kg-microbe environments.csv (bioreactor/digester)
NUTRIENTS	high	kg-microbe environments.csv (bioreactor/digester)
ORGANIC_MATTER	high	kg-microbe environments.csv (bioreactor/digester)
WATER_AVAILABILITY	high	kg-microbe environments.csv (bioreactor/digester)
WATER_VARIABILITY	permanently wet	kg-microbe environments.csv (bioreactor/digester)

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
Taxon	Source	Rank	Pool	Corroborated
Tepidanaerobacter acetatoxydans Re1 `NCBITaxon:1209989`	PREGO	2	101	MADIN
clostridium_amylolyticum `NCBITaxon:1121298`	MADIN	—	232	PREGO
clostridium_caenicola `NCBITaxon:659425`	MADIN	—	232	PREGO
Hydrogenispora ethanolica `NCBITaxon:1082276`	PREGO	1	101
Bacteroides luti `NCBITaxon:1297750`	PREGO	3	101
Clostridiaceae bacterium JGI 000176CP_B01 `NCBITaxon:1938638`	PREGO	4	101
Clostridiaceae bacterium JGI 000176CP_E08 `NCBITaxon:1938639`	PREGO	5	101
Clostridiales bacterium JGI 000170CP_A02 `NCBITaxon:1938641`	PREGO	6	101
Clostridiales bacterium JGI 000170CP_C01 `NCBITaxon:1938642`	PREGO	7	101
Clostridiales bacterium JGI 000170CP_C03 `NCBITaxon:1938643`	PREGO	8	101
Clostridiales bacterium JGI 000176CP_B07 `NCBITaxon:1938647`	PREGO	9	101
Clostridiales bacterium JGI 000176CP_E06 `NCBITaxon:1938649`	PREGO	10	101
Lachnospiraceae bacterium JGI 000170CP_F01 `NCBITaxon:1938652`	PREGO	11	101
Ruminococcaceae bacterium JGI 000176CP_B03 `NCBITaxon:1938653`	PREGO	12	101
Alkaliphilus sp. JGI 000170CP_B06 `NCBITaxon:1938739`	PREGO	13	101
Clostridium sp. JGI 000170CP_A06 `NCBITaxon:1938748`	PREGO	14	101
Clostridium sp. JGI 000170CP_E05 `NCBITaxon:1938750`	PREGO	15	101
Comamonas sp. JGI 000176CP_D06 `NCBITaxon:1938752`	PREGO	16	101
Spirosoma sp. JGI 000178CP_D11 `NCBITaxon:1938825`	PREGO	17	101
Streptococcus sp. JGI 000170CP_B04 `NCBITaxon:1938826`	PREGO	18	101
Streptococcus sp. JGI 000170CP_G01 `NCBITaxon:1938829`	PREGO	19	101
Syntrophomonas sp. JGI 000170CP_G06 `NCBITaxon:1938864`	PREGO	20	101
Syntrophomonas sp. JGI 000170CP_C07 `NCBITaxon:1938865`	PREGO	21	101
Alkaliphilus sp. JGI 000170CP_H07 `NCBITaxon:1938867`	PREGO	22	101
Clostridium sp. JGI 000170CP_A08 `NCBITaxon:1938868`	PREGO	23	101

Showing 25 of 49 kept associations.

Also called

bioreactors — PREGO

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

REVIEW 2026-08-13 · claude-opus-5
Reviewed and endorsed the seeder's own resolution. Multi-source review pass: this record is attested by more than one independent vocabulary, and this source's label or path was read against the record's ontology term to check the merge is right. It agrees. Source concepts in the same pass whose labels did not agree were re-decided rather than endorsed; see the pass's other decisions of the same date. (source concept habitatmech:GOLD.a6d15fca9f)
REVIEW 2026-08-13 · claude-opus-5
Reviewed and endorsed the seeder's own resolution. Multi-source review pass: this record is attested by more than one independent vocabulary, and this source's label or path was read against the record's ontology term to check the merge is right. It agrees. Source concepts in the same pass whose labels did not agree were re-decided rather than endorsed; see the pass's other decisions of the same date. (source concept habitatmech:PREGO.653b468218)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.