intestine environment

ENVO:2100002 ·resolve ·OTHER ·EXACT REVIEWED

An environmental system determined by an intestine. — ENVO

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
Source	Label / path	Assertions	Unit
ENVIRONMENTS_TABLE	host_animal_endotherm_intestinal Physicochemical parameter bands from kg-microbe's environment table.	—
MADIN	intestine environment	1963	TAXON
PREGO	intestine environment	2406	TAXON

Broader habitats

digestive tract environment ENVO:01001033

Environmental parameters

Physicochemical parameters
Parameter	Value	Source
GRADIENTS	high	kg-microbe environments.csv (host_animal_endotherm_intestinal)
NUTRIENTS	high	kg-microbe environments.csv (host_animal_endotherm_intestinal)
ORGANIC_MATTER	high	kg-microbe environments.csv (host_animal_endotherm_intestinal)
PRESSURE	low	kg-microbe environments.csv (host_animal_endotherm_intestinal)
SALINITY	medium	kg-microbe environments.csv (host_animal_endotherm_intestinal)
SALINITY_VARIABILITY	small	kg-microbe environments.csv (host_animal_endotherm_intestinal)
STRUCTURAL_COMPLEXITY	medium	kg-microbe environments.csv (host_animal_endotherm_intestinal)
TEMPERATURE	medium	kg-microbe environments.csv (host_animal_endotherm_intestinal)
TEMPERATURE_VARIABILITY	low	kg-microbe environments.csv (host_animal_endotherm_intestinal)
WATER_AVAILABILITY	medium	kg-microbe environments.csv (host_animal_endotherm_intestinal)
WATER_VARIABILITY	permanently wet	kg-microbe environments.csv (host_animal_endotherm_intestinal)

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
Taxon	Source	Rank	Pool	Corroborated
Escherichia coli O157 `NCBITaxon:1045010`	PREGO	10	2406	MADIN
ruminococcus_flavefaciens `NCBITaxon:1265`	MADIN	—	1963	PREGO
Staphylococcus aureus `NCBITaxon:1280`	MADIN	—	1963	PREGO
Streptococcus salivarius `NCBITaxon:1304`	MADIN	—	1963	PREGO
Streptococcus equinus `NCBITaxon:1335`	MADIN	—	1963	PREGO
Enterococcus faecalis `NCBITaxon:1351`	MADIN	—	1963	PREGO
Enterococcus faecium `NCBITaxon:1352`	MADIN	—	1963	PREGO
Bacillus cereus `NCBITaxon:1396`	MADIN	—	1963	PREGO
Bacillus pumilus `NCBITaxon:1408`	MADIN	—	1963	PREGO
Methanothermobacter thermautotrophicus `NCBITaxon:145262`	MADIN	—	1963	PREGO
clostridium_butyricum `NCBITaxon:1492`	MADIN	—	1963	PREGO
Clostridium difficile `NCBITaxon:1496`	MADIN	—	1963	PREGO
Clostridium perfringens `NCBITaxon:1502`	MADIN	—	1963	PREGO
Anoxybacillus pushchinensis `NCBITaxon:150248`	MADIN	—	1963	PREGO
clostridium_septicum `NCBITaxon:1504`	MADIN	—	1963	PREGO
clostridium_aminophilum `NCBITaxon:1526`	MADIN	—	1963	PREGO
clostridium_barati `NCBITaxon:1561`	MADIN	—	1963	PREGO
Lactobacillus brevis `NCBITaxon:1580`	MADIN	—	1963	PREGO
Lactobacillus helveticus `NCBITaxon:1587`	MADIN	—	1963	PREGO
Lactobacillus plantarum `NCBITaxon:1590`	MADIN	—	1963	PREGO
Lactobacillus gasseri `NCBITaxon:1596`	MADIN	—	1963	PREGO
Lactobacillus reuteri `NCBITaxon:1598`	MADIN	—	1963	PREGO
Lactobacillus fermentum `NCBITaxon:1613`	MADIN	—	1963	PREGO
Lactobacillus salivarius `NCBITaxon:1624`	MADIN	—	1963	PREGO
treponema_bryantii `NCBITaxon:163`	MADIN	—	1963	PREGO

Showing 25 of 49 kept associations.

Also called

intestine environments — PREGO

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

REVIEW 2026-08-15 · claude-opus-5
Reviewed and endorsed the seeder's own resolution. Co-attestor review (#12): this source names the ontology CURIE itself, so its grounding is definitional rather than a lexical guess — the record IS the term the source pointed at. Recorded so the record it co-attests can reach REVIEWED, which needs every source concept decided. (source concept habitatmech:MADIN.38ed811a63)
REVIEW 2026-08-15 · claude-opus-5
Reviewed and endorsed the seeder's own resolution. Co-attestor review (#12): this source names the ontology CURIE itself, so its grounding is definitional rather than a lexical guess — the record IS the term the source pointed at. Recorded so the record it co-attests can reach REVIEWED, which needs every source concept decided. (source concept habitatmech:PREGO.5bfab021ea)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.