Specimen

habitatmech:BACDIVE.db240195f6 ·OTHER ·NOT_APPLICABLE REVIEWED

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
Source	Label / path	Assertions	Unit
BACDIVE	Specimen kg-microbe's isolation-source mapping table has a row for this source with no ontology target; treated as ungrounded rather than re-grounded by lexical match.	159	STRAIN

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
Taxon	Source	Rank	Pool
Escherichia coli `NCBITaxon:562`	BACDIVE	1	103
Helicobacter pylori `NCBITaxon:210`	BACDIVE	2	103
Sporosarcina newyorkensis `NCBITaxon:759851`	BACDIVE	3	103
Leifsonia aquatica `NCBITaxon:144185`	BACDIVE	4	103
Klebsiella pneumoniae `NCBITaxon:573`	BACDIVE	5	103
Staphylococcus aureus `NCBITaxon:1280`	BACDIVE	6	103
Bacteroides fragilis `NCBITaxon:817`	BACDIVE	7	103
Hazenella coriacea `NCBITaxon:1179467`	BACDIVE	8	103
Clostridioides difficile `NCBITaxon:1496`	BACDIVE	9	103
Clostridium tetani `NCBITaxon:1513`	BACDIVE	10	103
Acinetobacter baumannii `NCBITaxon:470`	BACDIVE	11	103
Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 `NCBITaxon:102618`	BACDIVE	12	103
Ruminococcus gauvreauii DSM 19829 `NCBITaxon:1123075`	BACDIVE	13	103
Sphingobacterium multivorum DSM 11691 `NCBITaxon:1123264`	BACDIVE	14	103
Nocardia ignorata NBRC 108230 `NCBITaxon:1210075`	BACDIVE	15	103
Stutzerimonas kunmingensis `NCBITaxon:1211807`	BACDIVE	16	103
Mycolicibacterium monacense DSM 44395 `NCBITaxon:1226751`	BACDIVE	17	103
Escherichia coli JCM 18426 `NCBITaxon:1236522`	BACDIVE	18	103
Faecalimicrobium dakarense `NCBITaxon:1301100`	BACDIVE	19	103
Escherichia coli ATCC 25922 `NCBITaxon:1322345`	BACDIVE	20	103
Nocardia veterana `NCBITaxon:132249`	BACDIVE	21	103
Amycolatopsis orientalis DSM 46075 `NCBITaxon:1337958`	BACDIVE	22	103
Nocardiopsis listeri NBRC 13360 `NCBITaxon:1348637`	BACDIVE	23	103
Streptococcus dentiloxodontae `NCBITaxon:1352223`	BACDIVE	24	103
Enterococcus gallinarum `NCBITaxon:1353`	BACDIVE	25	103

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

NOT_APPLICABLE 2026-08-12 · claude-opus-5
Marked NOT_APPLICABLE: the source concept does not denote a habitat. 'Specimen' names a disease, an intervention, a sampling artefact or a no-value filler rather than a place. Pulled out of the class-level sweep and decided individually. (source concept habitatmech:BACDIVE.db240195f6)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.