HabitatMech

Specimen

habitatmech:BACDIVE.db240195f6 ·OTHER ·NOT_APPLICABLE REVIEWED

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
SourceLabel / pathAssertionsUnit
BACDIVE Specimen
kg-microbe's isolation-source mapping table has a row for this source with no ontology target; treated as ungrounded rather than re-grounded by lexical match.		 159 STRAIN

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
TaxonSourceRankPoolCorroborated
Escherichia coli NCBITaxon:562 BACDIVE 1 103
Helicobacter pylori NCBITaxon:210 BACDIVE 2 103
Sporosarcina newyorkensis NCBITaxon:759851 BACDIVE 3 103
Leifsonia aquatica NCBITaxon:144185 BACDIVE 4 103
Klebsiella pneumoniae NCBITaxon:573 BACDIVE 5 103
Staphylococcus aureus NCBITaxon:1280 BACDIVE 6 103
Bacteroides fragilis NCBITaxon:817 BACDIVE 7 103
Hazenella coriacea NCBITaxon:1179467 BACDIVE 8 103
Clostridioides difficile NCBITaxon:1496 BACDIVE 9 103
Clostridium tetani NCBITaxon:1513 BACDIVE 10 103
Acinetobacter baumannii NCBITaxon:470 BACDIVE 11 103
Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 NCBITaxon:102618 BACDIVE 12 103
Ruminococcus gauvreauii DSM 19829 NCBITaxon:1123075 BACDIVE 13 103
Sphingobacterium multivorum DSM 11691 NCBITaxon:1123264 BACDIVE 14 103
Nocardia ignorata NBRC 108230 NCBITaxon:1210075 BACDIVE 15 103
Stutzerimonas kunmingensis NCBITaxon:1211807 BACDIVE 16 103
Mycolicibacterium monacense DSM 44395 NCBITaxon:1226751 BACDIVE 17 103
Escherichia coli JCM 18426 NCBITaxon:1236522 BACDIVE 18 103
Faecalimicrobium dakarense NCBITaxon:1301100 BACDIVE 19 103
Escherichia coli ATCC 25922 NCBITaxon:1322345 BACDIVE 20 103
Nocardia veterana NCBITaxon:132249 BACDIVE 21 103
Amycolatopsis orientalis DSM 46075 NCBITaxon:1337958 BACDIVE 22 103
Nocardiopsis listeri NBRC 13360 NCBITaxon:1348637 BACDIVE 23 103
Streptococcus dentiloxodontae NCBITaxon:1352223 BACDIVE 24 103
Enterococcus gallinarum NCBITaxon:1353 BACDIVE 25 103

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

  1. NOT_APPLICABLE 2026-08-12 · claude-opus-5

    Marked NOT_APPLICABLE: the source concept does not denote a habitat. 'Specimen' names a disease, an intervention, a sampling artefact or a no-value filler rather than a place. Pulled out of the class-level sweep and decided individually. (source concept habitatmech:BACDIVE.db240195f6)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.